Experiment: 150_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS07770 and AMB_RS07775 are separated by 168 nucleotides AMB_RS07775 and AMB_RS07780 are separated by 63 nucleotides AMB_RS07780 and AMB_RS07785 are separated by 713 nucleotides
AMB_RS07770: AMB_RS07770 - methyl-accepting chemotaxis protein, at 1,667,229 to 1,669,244
_RS07770
AMB_RS07775: AMB_RS07775 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 1,669,413 to 1,670,177
_RS07775
AMB_RS07780: AMB_RS07780 - phosphoribosylformylglycinamidine synthase subunit PurS, at 1,670,241 to 1,670,483
_RS07780
AMB_RS07785: AMB_RS07785 - hypothetical protein, at 1,671,197 to 1,671,394
_RS07785
Position (kb) 1670
1671 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1669.242 kb on + strand at 1669.257 kb on - strand at 1669.257 kb on - strand at 1669.293 kb on + strand at 1669.293 kb on + strand at 1669.293 kb on + strand at 1669.293 kb on + strand at 1669.293 kb on + strand at 1669.295 kb on + strand at 1669.296 kb on - strand at 1669.424 kb on + strand at 1669.424 kb on + strand at 1669.424 kb on + strand at 1669.424 kb on + strand at 1669.434 kb on + strand at 1669.434 kb on + strand at 1669.435 kb on - strand at 1669.491 kb on + strand, within AMB_RS07775 at 1669.491 kb on + strand, within AMB_RS07775 at 1669.491 kb on + strand, within AMB_RS07775 at 1669.568 kb on + strand, within AMB_RS07775 at 1669.568 kb on + strand, within AMB_RS07775 at 1669.578 kb on + strand, within AMB_RS07775 at 1669.663 kb on + strand, within AMB_RS07775 at 1669.663 kb on + strand, within AMB_RS07775 at 1669.773 kb on + strand, within AMB_RS07775 at 1669.962 kb on + strand, within AMB_RS07775 at 1669.962 kb on + strand, within AMB_RS07775 at 1670.097 kb on + strand, within AMB_RS07775 at 1670.097 kb on + strand, within AMB_RS07775 at 1670.175 kb on + strand at 1670.210 kb on + strand at 1670.210 kb on + strand at 1670.218 kb on + strand at 1670.218 kb on + strand at 1670.932 kb on - strand at 1671.095 kb on - strand at 1671.203 kb on + strand at 1671.224 kb on + strand, within AMB_RS07785 at 1671.225 kb on - strand, within AMB_RS07785 at 1671.226 kb on + strand, within AMB_RS07785 at 1671.226 kb on + strand, within AMB_RS07785 at 1671.226 kb on + strand, within AMB_RS07785 at 1671.226 kb on + strand, within AMB_RS07785 at 1671.227 kb on - strand, within AMB_RS07785 at 1671.323 kb on + strand, within AMB_RS07785 at 1671.324 kb on - strand, within AMB_RS07785 at 1671.324 kb on - strand, within AMB_RS07785 at 1671.326 kb on + strand, within AMB_RS07785 at 1671.335 kb on + strand, within AMB_RS07785 at 1671.336 kb on - strand, within AMB_RS07785 at 1671.337 kb on + strand, within AMB_RS07785 at 1671.396 kb on - strand at 1671.434 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_2 remove 1,669,242 + -0.8 1,669,257 - -1.0 1,669,257 - -0.0 1,669,293 + -0.0 1,669,293 + -3.2 1,669,293 + -0.9 1,669,293 + -0.2 1,669,293 + -1.4 1,669,295 + -0.7 1,669,296 - -0.0 1,669,424 + +0.0 1,669,424 + -0.4 1,669,424 + +1.9 1,669,424 + +0.7 1,669,434 + -3.6 1,669,434 + +1.0 1,669,435 - -2.0 1,669,491 + AMB_RS07775 0.10 -3.4 1,669,491 + AMB_RS07775 0.10 -2.7 1,669,491 + AMB_RS07775 0.10 +0.1 1,669,568 + AMB_RS07775 0.20 -2.0 1,669,568 + AMB_RS07775 0.20 +0.1 1,669,578 + AMB_RS07775 0.22 -2.4 1,669,663 + AMB_RS07775 0.33 -1.2 1,669,663 + AMB_RS07775 0.33 -4.7 1,669,773 + AMB_RS07775 0.47 -0.2 1,669,962 + AMB_RS07775 0.72 -0.5 1,669,962 + AMB_RS07775 0.72 -2.0 1,670,097 + AMB_RS07775 0.89 -3.9 1,670,097 + AMB_RS07775 0.89 -1.5 1,670,175 + +0.3 1,670,210 + -2.0 1,670,210 + +1.1 1,670,218 + +2.3 1,670,218 + -3.0 1,670,932 - -1.5 1,671,095 - -2.4 1,671,203 + -2.0 1,671,224 + AMB_RS07785 0.14 +0.8 1,671,225 - AMB_RS07785 0.14 -3.0 1,671,226 + AMB_RS07785 0.15 -0.3 1,671,226 + AMB_RS07785 0.15 -0.6 1,671,226 + AMB_RS07785 0.15 +1.6 1,671,226 + AMB_RS07785 0.15 -3.6 1,671,227 - AMB_RS07785 0.15 +1.1 1,671,323 + AMB_RS07785 0.64 -1.9 1,671,324 - AMB_RS07785 0.64 +0.2 1,671,324 - AMB_RS07785 0.64 -0.4 1,671,326 + AMB_RS07785 0.65 -0.4 1,671,335 + AMB_RS07785 0.70 +0.8 1,671,336 - AMB_RS07785 0.70 +0.5 1,671,337 + AMB_RS07785 0.71 +1.1 1,671,396 - -0.3 1,671,434 - -2.0
Or see this region's nucleotide sequence