Experiment: 150_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS06030 and AMB_RS06035 are separated by 29 nucleotides AMB_RS06035 and AMB_RS06040 overlap by 8 nucleotides AMB_RS06040 and AMB_RS06045 are separated by 67 nucleotides AMB_RS06045 and AMB_RS06050 overlap by 4 nucleotides
AMB_RS06030: AMB_RS06030 - hypothetical protein, at 1,263,605 to 1,264,042
_RS06030
AMB_RS06035: AMB_RS06035 - hypothetical protein, at 1,264,072 to 1,264,422
_RS06035
AMB_RS06040: AMB_RS06040 - DUF1833 domain-containing protein, at 1,264,415 to 1,264,939
_RS06040
AMB_RS06045: AMB_RS06045 - hypothetical protein, at 1,265,007 to 1,265,402
_RS06045
AMB_RS06050: AMB_RS06050 - hypothetical protein, at 1,265,399 to 1,267,726
_RS06050
Position (kb) 1265
1266 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1264.041 kb on - strand at 1264.117 kb on + strand, within AMB_RS06035 at 1264.117 kb on + strand, within AMB_RS06035 at 1264.117 kb on + strand, within AMB_RS06035 at 1264.117 kb on + strand, within AMB_RS06035 at 1264.117 kb on + strand, within AMB_RS06035 at 1264.117 kb on + strand, within AMB_RS06035 at 1264.410 kb on + strand at 1264.490 kb on - strand, within AMB_RS06040 at 1264.792 kb on + strand, within AMB_RS06040 at 1264.904 kb on + strand at 1264.904 kb on + strand at 1264.904 kb on + strand at 1264.904 kb on + strand at 1264.905 kb on - strand at 1264.905 kb on - strand at 1264.905 kb on - strand at 1264.906 kb on + strand at 1265.025 kb on + strand at 1265.025 kb on + strand at 1265.025 kb on + strand at 1265.027 kb on + strand at 1265.219 kb on + strand, within AMB_RS06045 at 1265.385 kb on + strand at 1265.385 kb on + strand at 1265.579 kb on + strand at 1265.579 kb on + strand at 1265.579 kb on + strand at 1265.579 kb on + strand at 1265.579 kb on + strand at 1265.580 kb on - strand at 1265.580 kb on - strand at 1265.580 kb on - strand at 1265.714 kb on + strand, within AMB_RS06050 at 1265.715 kb on - strand, within AMB_RS06050 at 1265.715 kb on - strand, within AMB_RS06050 at 1265.719 kb on - strand, within AMB_RS06050 at 1265.719 kb on - strand, within AMB_RS06050 at 1265.747 kb on + strand, within AMB_RS06050 at 1265.747 kb on + strand, within AMB_RS06050 at 1265.818 kb on + strand, within AMB_RS06050 at 1265.819 kb on - strand, within AMB_RS06050 at 1265.819 kb on - strand, within AMB_RS06050 at 1265.958 kb on - strand, within AMB_RS06050 at 1265.958 kb on - strand, within AMB_RS06050 at 1265.958 kb on - strand, within AMB_RS06050 at 1265.958 kb on - strand, within AMB_RS06050 at 1266.008 kb on + strand, within AMB_RS06050 at 1266.008 kb on + strand, within AMB_RS06050 at 1266.026 kb on + strand, within AMB_RS06050 at 1266.032 kb on + strand, within AMB_RS06050 at 1266.032 kb on + strand, within AMB_RS06050 at 1266.242 kb on + strand, within AMB_RS06050 at 1266.242 kb on + strand, within AMB_RS06050 at 1266.242 kb on + strand, within AMB_RS06050 at 1266.243 kb on - strand, within AMB_RS06050 at 1266.244 kb on + strand, within AMB_RS06050 at 1266.244 kb on + strand, within AMB_RS06050 at 1266.244 kb on + strand, within AMB_RS06050 at 1266.244 kb on + strand, within AMB_RS06050 at 1266.245 kb on - strand, within AMB_RS06050 at 1266.245 kb on - strand, within AMB_RS06050 at 1266.245 kb on - strand, within AMB_RS06050
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_2 remove 1,264,041 - -1.3 1,264,117 + AMB_RS06035 0.13 -2.6 1,264,117 + AMB_RS06035 0.13 -0.4 1,264,117 + AMB_RS06035 0.13 +0.7 1,264,117 + AMB_RS06035 0.13 +1.7 1,264,117 + AMB_RS06035 0.13 -1.8 1,264,117 + AMB_RS06035 0.13 -2.0 1,264,410 + +0.0 1,264,490 - AMB_RS06040 0.14 +3.5 1,264,792 + AMB_RS06040 0.72 +1.0 1,264,904 + -1.0 1,264,904 + -2.6 1,264,904 + +1.0 1,264,904 + +1.3 1,264,905 - +1.7 1,264,905 - -1.0 1,264,905 - -1.6 1,264,906 + +0.0 1,265,025 + -1.0 1,265,025 + +0.1 1,265,025 + -2.3 1,265,027 + -2.4 1,265,219 + AMB_RS06045 0.54 -3.1 1,265,385 + -1.1 1,265,385 + -1.4 1,265,579 + +2.0 1,265,579 + +0.0 1,265,579 + -1.3 1,265,579 + -3.1 1,265,579 + -0.8 1,265,580 - -1.8 1,265,580 - +0.6 1,265,580 - -2.6 1,265,714 + AMB_RS06050 0.14 -2.3 1,265,715 - AMB_RS06050 0.14 -4.7 1,265,715 - AMB_RS06050 0.14 -0.1 1,265,719 - AMB_RS06050 0.14 +0.2 1,265,719 - AMB_RS06050 0.14 +0.5 1,265,747 + AMB_RS06050 0.15 -4.0 1,265,747 + AMB_RS06050 0.15 +0.0 1,265,818 + AMB_RS06050 0.18 -1.0 1,265,819 - AMB_RS06050 0.18 -1.9 1,265,819 - AMB_RS06050 0.18 -2.0 1,265,958 - AMB_RS06050 0.24 -2.0 1,265,958 - AMB_RS06050 0.24 -1.6 1,265,958 - AMB_RS06050 0.24 -1.0 1,265,958 - AMB_RS06050 0.24 +0.0 1,266,008 + AMB_RS06050 0.26 +0.6 1,266,008 + AMB_RS06050 0.26 +0.4 1,266,026 + AMB_RS06050 0.27 -1.0 1,266,032 + AMB_RS06050 0.27 +0.3 1,266,032 + AMB_RS06050 0.27 -0.7 1,266,242 + AMB_RS06050 0.36 -0.3 1,266,242 + AMB_RS06050 0.36 -0.1 1,266,242 + AMB_RS06050 0.36 -3.3 1,266,243 - AMB_RS06050 0.36 -2.7 1,266,244 + AMB_RS06050 0.36 -3.1 1,266,244 + AMB_RS06050 0.36 -2.0 1,266,244 + AMB_RS06050 0.36 -2.7 1,266,244 + AMB_RS06050 0.36 -0.6 1,266,245 - AMB_RS06050 0.36 -2.7 1,266,245 - AMB_RS06050 0.36 -0.0 1,266,245 - AMB_RS06050 0.36 +1.0
Or see this region's nucleotide sequence