Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05940

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05935 and AMB_RS05940 are separated by 5 nucleotidesAMB_RS05940 and AMB_RS05945 are separated by 2 nucleotides AMB_RS05935: AMB_RS05935 - phage terminase large subunit family protein, at 1,246,263 to 1,248,251 _RS05935 AMB_RS05940: AMB_RS05940 - hypothetical protein, at 1,248,257 to 1,248,466 _RS05940 AMB_RS05945: AMB_RS05945 - phage portal protein, at 1,248,469 to 1,249,887 _RS05945 Position (kb) 1248 1249Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1247.385 kb on + strand, within AMB_RS05935at 1247.584 kb on + strand, within AMB_RS05935at 1247.585 kb on - strand, within AMB_RS05935at 1247.585 kb on - strand, within AMB_RS05935at 1247.585 kb on - strand, within AMB_RS05935at 1247.656 kb on - strand, within AMB_RS05935at 1247.674 kb on - strand, within AMB_RS05935at 1247.675 kb on + strand, within AMB_RS05935at 1247.675 kb on + strand, within AMB_RS05935at 1247.675 kb on + strand, within AMB_RS05935at 1247.675 kb on + strand, within AMB_RS05935at 1247.707 kb on + strand, within AMB_RS05935at 1247.708 kb on - strand, within AMB_RS05935at 1247.766 kb on + strand, within AMB_RS05935at 1247.766 kb on + strand, within AMB_RS05935at 1247.766 kb on + strand, within AMB_RS05935at 1247.767 kb on - strand, within AMB_RS05935at 1247.767 kb on - strand, within AMB_RS05935at 1247.767 kb on - strand, within AMB_RS05935at 1247.853 kb on + strand, within AMB_RS05935at 1247.854 kb on - strand, within AMB_RS05935at 1248.069 kb on + strandat 1248.070 kb on - strandat 1248.240 kb on + strandat 1248.240 kb on + strandat 1248.240 kb on + strandat 1248.241 kb on - strandat 1248.241 kb on - strandat 1248.242 kb on + strandat 1248.243 kb on - strandat 1248.243 kb on - strandat 1248.243 kb on - strandat 1248.243 kb on - strandat 1248.353 kb on + strand, within AMB_RS05940at 1248.354 kb on - strand, within AMB_RS05940at 1248.354 kb on - strand, within AMB_RS05940at 1248.799 kb on + strand, within AMB_RS05945at 1248.799 kb on + strand, within AMB_RS05945at 1248.799 kb on + strand, within AMB_RS05945at 1248.800 kb on - strand, within AMB_RS05945at 1249.189 kb on + strand, within AMB_RS05945at 1249.231 kb on + strand, within AMB_RS05945at 1249.231 kb on + strand, within AMB_RS05945at 1249.231 kb on + strand, within AMB_RS05945at 1249.231 kb on + strand, within AMB_RS05945at 1249.231 kb on + strand, within AMB_RS05945at 1249.231 kb on + strand, within AMB_RS05945at 1249.231 kb on + strand, within AMB_RS05945at 1249.231 kb on + strand, within AMB_RS05945at 1249.231 kb on + strand, within AMB_RS05945at 1249.231 kb on + strand, within AMB_RS05945at 1249.231 kb on + strand, within AMB_RS05945at 1249.232 kb on - strand, within AMB_RS05945at 1249.232 kb on - strand, within AMB_RS05945at 1249.232 kb on - strand, within AMB_RS05945at 1249.232 kb on - strand, within AMB_RS05945at 1249.232 kb on - strand, within AMB_RS05945at 1249.232 kb on - strand, within AMB_RS05945at 1249.394 kb on - strand, within AMB_RS05945at 1249.394 kb on - strand, within AMB_RS05945at 1249.450 kb on + strand, within AMB_RS05945at 1249.456 kb on + strand, within AMB_RS05945at 1249.457 kb on - strand, within AMB_RS05945at 1249.457 kb on - strand, within AMB_RS05945at 1249.457 kb on - strand, within AMB_RS05945at 1249.457 kb on - strand, within AMB_RS05945at 1249.457 kb on - strand, within AMB_RS05945

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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1,247,385 + AMB_RS05935 0.56 -0.6
1,247,584 + AMB_RS05935 0.66 -3.1
1,247,585 - AMB_RS05935 0.66 -2.0
1,247,585 - AMB_RS05935 0.66 +1.5
1,247,585 - AMB_RS05935 0.66 -0.0
1,247,656 - AMB_RS05935 0.70 -2.3
1,247,674 - AMB_RS05935 0.71 -0.6
1,247,675 + AMB_RS05935 0.71 -3.7
1,247,675 + AMB_RS05935 0.71 -2.0
1,247,675 + AMB_RS05935 0.71 -0.0
1,247,675 + AMB_RS05935 0.71 +0.7
1,247,707 + AMB_RS05935 0.73 -0.4
1,247,708 - AMB_RS05935 0.73 -1.0
1,247,766 + AMB_RS05935 0.76 -3.3
1,247,766 + AMB_RS05935 0.76 -2.3
1,247,766 + AMB_RS05935 0.76 +1.3
1,247,767 - AMB_RS05935 0.76 -0.3
1,247,767 - AMB_RS05935 0.76 -2.3
1,247,767 - AMB_RS05935 0.76 -0.2
1,247,853 + AMB_RS05935 0.80 -0.9
1,247,854 - AMB_RS05935 0.80 -1.1
1,248,069 + +0.2
1,248,070 - -1.1
1,248,240 + +1.8
1,248,240 + -0.2
1,248,240 + -1.8
1,248,241 - +2.0
1,248,241 - +1.1
1,248,242 + -0.6
1,248,243 - -3.1
1,248,243 - -2.7
1,248,243 - -1.4
1,248,243 - +2.0
1,248,353 + AMB_RS05940 0.46 -2.0
1,248,354 - AMB_RS05940 0.46 -2.7
1,248,354 - AMB_RS05940 0.46 -0.5
1,248,799 + AMB_RS05945 0.23 -1.7
1,248,799 + AMB_RS05945 0.23 -1.5
1,248,799 + AMB_RS05945 0.23 +0.6
1,248,800 - AMB_RS05945 0.23 -4.0
1,249,189 + AMB_RS05945 0.51 +1.9
1,249,231 + AMB_RS05945 0.54 -2.8
1,249,231 + AMB_RS05945 0.54 -0.2
1,249,231 + AMB_RS05945 0.54 -2.2
1,249,231 + AMB_RS05945 0.54 -2.5
1,249,231 + AMB_RS05945 0.54 -4.9
1,249,231 + AMB_RS05945 0.54 -0.5
1,249,231 + AMB_RS05945 0.54 +1.5
1,249,231 + AMB_RS05945 0.54 +0.7
1,249,231 + AMB_RS05945 0.54 -0.6
1,249,231 + AMB_RS05945 0.54 -2.7
1,249,231 + AMB_RS05945 0.54 +2.7
1,249,232 - AMB_RS05945 0.54 +0.1
1,249,232 - AMB_RS05945 0.54 +0.2
1,249,232 - AMB_RS05945 0.54 +0.2
1,249,232 - AMB_RS05945 0.54 -0.3
1,249,232 - AMB_RS05945 0.54 -2.9
1,249,232 - AMB_RS05945 0.54 -1.6
1,249,394 - AMB_RS05945 0.65 +1.9
1,249,394 - AMB_RS05945 0.65 +0.5
1,249,450 + AMB_RS05945 0.69 +0.9
1,249,456 + AMB_RS05945 0.70 -4.5
1,249,457 - AMB_RS05945 0.70 +3.2
1,249,457 - AMB_RS05945 0.70 -1.0
1,249,457 - AMB_RS05945 0.70 -2.3
1,249,457 - AMB_RS05945 0.70 -0.0
1,249,457 - AMB_RS05945 0.70 -3.0

Or see this region's nucleotide sequence