Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03935

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03925 and AMB_RS03930 are separated by 11 nucleotidesAMB_RS03930 and AMB_RS03935 are separated by 8 nucleotidesAMB_RS03935 and AMB_RS03940 overlap by 1 nucleotides AMB_RS03925: AMB_RS03925 - glycine cleavage system protein T, at 822,700 to 823,815 _RS03925 AMB_RS03930: AMB_RS03930 - glycine cleavage system protein H, at 823,827 to 824,204 _RS03930 AMB_RS03935: AMB_RS03935 - glycine dehydrogenase, at 824,213 to 825,562 _RS03935 AMB_RS03940: AMB_RS03940 - glycine dehydrogenase (aminomethyl-transferring), at 825,562 to 827,061 _RS03940 Position (kb) 824 825 826Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 823.277 kb on - strand, within AMB_RS03925at 823.277 kb on - strand, within AMB_RS03925at 823.279 kb on - strand, within AMB_RS03925at 823.420 kb on + strand, within AMB_RS03925at 823.421 kb on - strand, within AMB_RS03925at 823.421 kb on - strand, within AMB_RS03925at 823.421 kb on - strand, within AMB_RS03925at 823.696 kb on + strand, within AMB_RS03925at 823.696 kb on + strand, within AMB_RS03925at 823.697 kb on - strand, within AMB_RS03925at 823.697 kb on - strand, within AMB_RS03925at 823.697 kb on - strand, within AMB_RS03925at 823.697 kb on - strand, within AMB_RS03925at 823.801 kb on + strandat 823.802 kb on - strandat 823.802 kb on - strandat 823.905 kb on + strand, within AMB_RS03930at 823.905 kb on + strand, within AMB_RS03930at 823.906 kb on - strand, within AMB_RS03930at 824.023 kb on - strand, within AMB_RS03930at 824.023 kb on - strand, within AMB_RS03930at 824.023 kb on - strand, within AMB_RS03930at 824.176 kb on - strandat 824.185 kb on - strandat 824.202 kb on + strandat 824.203 kb on - strandat 824.203 kb on - strandat 824.203 kb on - strandat 824.203 kb on - strandat 824.219 kb on + strandat 824.220 kb on - strandat 824.504 kb on + strand, within AMB_RS03935at 824.504 kb on + strand, within AMB_RS03935at 824.504 kb on + strand, within AMB_RS03935at 824.504 kb on + strand, within AMB_RS03935at 824.504 kb on + strand, within AMB_RS03935at 824.504 kb on + strand, within AMB_RS03935at 824.504 kb on + strand, within AMB_RS03935at 824.505 kb on - strand, within AMB_RS03935at 824.505 kb on - strand, within AMB_RS03935at 824.505 kb on - strand, within AMB_RS03935at 824.505 kb on - strand, within AMB_RS03935at 824.505 kb on - strand, within AMB_RS03935at 824.506 kb on + strand, within AMB_RS03935at 824.588 kb on - strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.709 kb on - strand, within AMB_RS03935at 825.003 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.063 kb on + strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.157 kb on + strand, within AMB_RS03935at 825.157 kb on + strand, within AMB_RS03935at 825.157 kb on + strand, within AMB_RS03935at 825.157 kb on + strand, within AMB_RS03935at 825.158 kb on - strand, within AMB_RS03935at 825.158 kb on - strand, within AMB_RS03935at 825.158 kb on - strand, within AMB_RS03935at 825.347 kb on + strand, within AMB_RS03935at 825.347 kb on + strand, within AMB_RS03935at 825.347 kb on + strand, within AMB_RS03935at 825.347 kb on + strand, within AMB_RS03935at 825.347 kb on + strand, within AMB_RS03935at 825.348 kb on - strand, within AMB_RS03935at 825.348 kb on - strand, within AMB_RS03935at 825.348 kb on - strand, within AMB_RS03935at 825.350 kb on + strand, within AMB_RS03935at 825.350 kb on + strand, within AMB_RS03935at 825.350 kb on + strand, within AMB_RS03935at 825.350 kb on + strand, within AMB_RS03935at 825.350 kb on + strand, within AMB_RS03935at 825.351 kb on - strand, within AMB_RS03935at 825.351 kb on - strand, within AMB_RS03935at 825.351 kb on - strand, within AMB_RS03935at 825.351 kb on - strand, within AMB_RS03935at 825.351 kb on - strand, within AMB_RS03935at 825.351 kb on - strand, within AMB_RS03935at 825.455 kb on + strandat 825.455 kb on + strandat 825.456 kb on - strandat 825.456 kb on - strandat 825.511 kb on + strandat 825.576 kb on + strandat 825.577 kb on - strandat 825.577 kb on - strandat 825.577 kb on - strandat 825.760 kb on + strand, within AMB_RS03940at 825.760 kb on + strand, within AMB_RS03940at 825.760 kb on + strand, within AMB_RS03940at 825.760 kb on + strand, within AMB_RS03940at 825.760 kb on + strand, within AMB_RS03940at 825.761 kb on - strand, within AMB_RS03940at 825.784 kb on + strand, within AMB_RS03940at 825.785 kb on - strand, within AMB_RS03940at 825.805 kb on + strand, within AMB_RS03940at 825.805 kb on + strand, within AMB_RS03940at 825.805 kb on + strand, within AMB_RS03940at 825.805 kb on + strand, within AMB_RS03940at 825.806 kb on - strand, within AMB_RS03940at 825.806 kb on - strand, within AMB_RS03940at 826.136 kb on - strand, within AMB_RS03940at 826.137 kb on + strand, within AMB_RS03940at 826.138 kb on - strand, within AMB_RS03940at 826.138 kb on - strand, within AMB_RS03940at 826.138 kb on - strand, within AMB_RS03940at 826.312 kb on + strand, within AMB_RS03940at 826.312 kb on + strand, within AMB_RS03940at 826.489 kb on + strand, within AMB_RS03940at 826.489 kb on + strand, within AMB_RS03940at 826.489 kb on + strand, within AMB_RS03940at 826.489 kb on + strand, within AMB_RS03940at 826.489 kb on + strand, within AMB_RS03940at 826.490 kb on - strand, within AMB_RS03940at 826.490 kb on - strand, within AMB_RS03940at 826.490 kb on - strand, within AMB_RS03940

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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823,277 - AMB_RS03925 0.52 -3.0
823,277 - AMB_RS03925 0.52 +0.8
823,279 - AMB_RS03925 0.52 -3.4
823,420 + AMB_RS03925 0.65 +1.9
823,421 - AMB_RS03925 0.65 +0.2
823,421 - AMB_RS03925 0.65 -2.9
823,421 - AMB_RS03925 0.65 +0.1
823,696 + AMB_RS03925 0.89 +1.0
823,696 + AMB_RS03925 0.89 +0.6
823,697 - AMB_RS03925 0.89 -2.6
823,697 - AMB_RS03925 0.89 -1.1
823,697 - AMB_RS03925 0.89 -3.1
823,697 - AMB_RS03925 0.89 -2.0
823,801 + -1.1
823,802 - -2.7
823,802 - +0.2
823,905 + AMB_RS03930 0.21 -0.6
823,905 + AMB_RS03930 0.21 -2.7
823,906 - AMB_RS03930 0.21 -0.2
824,023 - AMB_RS03930 0.52 +0.8
824,023 - AMB_RS03930 0.52 -3.6
824,023 - AMB_RS03930 0.52 -2.6
824,176 - -3.6
824,185 - -3.5
824,202 + -1.6
824,203 - +0.7
824,203 - -3.2
824,203 - -1.6
824,203 - +1.5
824,219 + -0.5
824,220 - -4.0
824,504 + AMB_RS03935 0.22 -2.9
824,504 + AMB_RS03935 0.22 -0.6
824,504 + AMB_RS03935 0.22 +1.0
824,504 + AMB_RS03935 0.22 -2.9
824,504 + AMB_RS03935 0.22 -0.1
824,504 + AMB_RS03935 0.22 -3.6
824,504 + AMB_RS03935 0.22 +3.3
824,505 - AMB_RS03935 0.22 +0.6
824,505 - AMB_RS03935 0.22 -0.6
824,505 - AMB_RS03935 0.22 -2.0
824,505 - AMB_RS03935 0.22 -2.7
824,505 - AMB_RS03935 0.22 -4.0
824,506 + AMB_RS03935 0.22 -0.6
824,588 - AMB_RS03935 0.28 +0.9
824,612 + AMB_RS03935 0.30 -2.2
824,612 + AMB_RS03935 0.30 -3.3
824,612 + AMB_RS03935 0.30 +0.5
824,612 + AMB_RS03935 0.30 +1.3
824,612 + AMB_RS03935 0.30 -1.0
824,612 + AMB_RS03935 0.30 -2.7
824,612 + AMB_RS03935 0.30 -0.6
824,612 + AMB_RS03935 0.30 +2.3
824,612 + AMB_RS03935 0.30 +2.3
824,612 + AMB_RS03935 0.30 +0.6
824,613 - AMB_RS03935 0.30 -2.5
824,613 - AMB_RS03935 0.30 +0.7
824,613 - AMB_RS03935 0.30 +0.2
824,613 - AMB_RS03935 0.30 -1.6
824,613 - AMB_RS03935 0.30 +1.7
824,613 - AMB_RS03935 0.30 -2.8
824,613 - AMB_RS03935 0.30 -0.3
824,613 - AMB_RS03935 0.30 +0.4
824,613 - AMB_RS03935 0.30 +0.0
824,613 - AMB_RS03935 0.30 -3.3
824,709 - AMB_RS03935 0.37 +2.7
825,003 + AMB_RS03935 0.59 -2.7
825,062 + AMB_RS03935 0.63 +0.4
825,062 + AMB_RS03935 0.63 -2.0
825,062 + AMB_RS03935 0.63 +0.2
825,062 + AMB_RS03935 0.63 -2.7
825,062 + AMB_RS03935 0.63 -1.0
825,062 + AMB_RS03935 0.63 -2.2
825,062 + AMB_RS03935 0.63 -0.6
825,062 + AMB_RS03935 0.63 -1.2
825,062 + AMB_RS03935 0.63 -0.7
825,062 + AMB_RS03935 0.63 +1.8
825,062 + AMB_RS03935 0.63 -0.3
825,062 + AMB_RS03935 0.63 -2.6
825,062 + AMB_RS03935 0.63 -1.6
825,062 + AMB_RS03935 0.63 -3.6
825,062 + AMB_RS03935 0.63 +0.5
825,062 + AMB_RS03935 0.63 -4.6
825,062 + AMB_RS03935 0.63 -3.2
825,063 + AMB_RS03935 0.63 -0.7
825,063 - AMB_RS03935 0.63 +1.3
825,063 - AMB_RS03935 0.63 -3.0
825,063 - AMB_RS03935 0.63 -1.0
825,063 - AMB_RS03935 0.63 +0.6
825,063 - AMB_RS03935 0.63 -0.5
825,063 - AMB_RS03935 0.63 -0.7
825,063 - AMB_RS03935 0.63 -1.3
825,063 - AMB_RS03935 0.63 -3.1
825,063 - AMB_RS03935 0.63 -2.9
825,063 - AMB_RS03935 0.63 +0.1
825,157 + AMB_RS03935 0.70 -2.6
825,157 + AMB_RS03935 0.70 +2.4
825,157 + AMB_RS03935 0.70 +0.0
825,157 + AMB_RS03935 0.70 -0.3
825,158 - AMB_RS03935 0.70 +0.0
825,158 - AMB_RS03935 0.70 -1.3
825,158 - AMB_RS03935 0.70 +1.3
825,347 + AMB_RS03935 0.84 -0.8
825,347 + AMB_RS03935 0.84 +0.3
825,347 + AMB_RS03935 0.84 +0.2
825,347 + AMB_RS03935 0.84 -0.3
825,347 + AMB_RS03935 0.84 -2.5
825,348 - AMB_RS03935 0.84 -3.1
825,348 - AMB_RS03935 0.84 -4.0
825,348 - AMB_RS03935 0.84 -1.8
825,350 + AMB_RS03935 0.84 -3.0
825,350 + AMB_RS03935 0.84 -0.2
825,350 + AMB_RS03935 0.84 +0.2
825,350 + AMB_RS03935 0.84 +1.5
825,350 + AMB_RS03935 0.84 +1.0
825,351 - AMB_RS03935 0.84 +1.5
825,351 - AMB_RS03935 0.84 +0.4
825,351 - AMB_RS03935 0.84 -1.6
825,351 - AMB_RS03935 0.84 -2.0
825,351 - AMB_RS03935 0.84 +1.3
825,351 - AMB_RS03935 0.84 -0.7
825,455 + -1.4
825,455 + -4.7
825,456 - -4.0
825,456 - +0.2
825,511 + -0.5
825,576 + -2.2
825,577 - -1.8
825,577 - -0.2
825,577 - +0.5
825,760 + AMB_RS03940 0.13 -1.9
825,760 + AMB_RS03940 0.13 +1.3
825,760 + AMB_RS03940 0.13 -1.1
825,760 + AMB_RS03940 0.13 -0.4
825,760 + AMB_RS03940 0.13 -0.6
825,761 - AMB_RS03940 0.13 +2.0
825,784 + AMB_RS03940 0.15 +0.6
825,785 - AMB_RS03940 0.15 -2.3
825,805 + AMB_RS03940 0.16 -0.6
825,805 + AMB_RS03940 0.16 -0.3
825,805 + AMB_RS03940 0.16 -0.4
825,805 + AMB_RS03940 0.16 +0.6
825,806 - AMB_RS03940 0.16 -4.0
825,806 - AMB_RS03940 0.16 +0.0
826,136 - AMB_RS03940 0.38 -1.6
826,137 + AMB_RS03940 0.38 -0.6
826,138 - AMB_RS03940 0.38 -1.0
826,138 - AMB_RS03940 0.38 -0.5
826,138 - AMB_RS03940 0.38 +0.5
826,312 + AMB_RS03940 0.50 -0.9
826,312 + AMB_RS03940 0.50 -4.6
826,489 + AMB_RS03940 0.62 -3.3
826,489 + AMB_RS03940 0.62 -3.5
826,489 + AMB_RS03940 0.62 -1.8
826,489 + AMB_RS03940 0.62 -1.8
826,489 + AMB_RS03940 0.62 -1.7
826,490 - AMB_RS03940 0.62 -0.2
826,490 - AMB_RS03940 0.62 -0.4
826,490 - AMB_RS03940 0.62 -3.4

Or see this region's nucleotide sequence