Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03510

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03505 and AMB_RS03510 are separated by 455 nucleotidesAMB_RS03510 and AMB_RS03515 are separated by 186 nucleotides AMB_RS03505: AMB_RS03505 - type I DNA topoisomerase, at 733,084 to 735,774 _RS03505 AMB_RS03510: AMB_RS03510 - flagellin-like protein, at 736,230 to 737,816 _RS03510 AMB_RS03515: AMB_RS03515 - DUF115 domain-containing protein, at 738,003 to 740,003 _RS03515 Position (kb) 736 737 738Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 735.772 kb on + strandat 735.773 kb on - strandat 735.919 kb on - strandat 736.105 kb on - strandat 736.105 kb on - strandat 736.177 kb on + strandat 736.177 kb on + strandat 736.177 kb on + strandat 736.177 kb on + strandat 736.177 kb on + strandat 736.178 kb on - strandat 736.213 kb on + strandat 736.213 kb on + strandat 736.213 kb on + strandat 736.213 kb on + strandat 736.214 kb on - strandat 736.229 kb on + strandat 736.230 kb on - strandat 736.248 kb on - strandat 736.248 kb on - strandat 736.248 kb on - strandat 736.833 kb on + strand, within AMB_RS03510at 736.834 kb on - strand, within AMB_RS03510at 736.869 kb on + strand, within AMB_RS03510at 736.870 kb on - strand, within AMB_RS03510at 736.881 kb on + strand, within AMB_RS03510at 736.912 kb on - strand, within AMB_RS03510at 737.185 kb on - strand, within AMB_RS03510at 737.185 kb on - strand, within AMB_RS03510at 737.186 kb on + strand, within AMB_RS03510at 737.187 kb on - strand, within AMB_RS03510at 737.415 kb on + strand, within AMB_RS03510at 737.416 kb on - strand, within AMB_RS03510at 737.430 kb on + strand, within AMB_RS03510at 737.430 kb on + strand, within AMB_RS03510at 737.433 kb on + strand, within AMB_RS03510at 737.433 kb on + strand, within AMB_RS03510at 737.460 kb on + strand, within AMB_RS03510at 737.461 kb on - strand, within AMB_RS03510at 737.461 kb on - strand, within AMB_RS03510at 737.497 kb on - strand, within AMB_RS03510at 737.511 kb on + strand, within AMB_RS03510at 737.512 kb on - strand, within AMB_RS03510at 737.512 kb on - strand, within AMB_RS03510at 737.512 kb on - strand, within AMB_RS03510at 737.655 kb on + strand, within AMB_RS03510at 737.656 kb on - strand, within AMB_RS03510at 737.656 kb on - strand, within AMB_RS03510at 737.656 kb on - strand, within AMB_RS03510at 737.814 kb on + strandat 737.814 kb on + strandat 737.815 kb on - strandat 737.829 kb on - strandat 737.829 kb on - strandat 737.829 kb on - strandat 737.975 kb on - strandat 737.975 kb on - strandat 738.171 kb on + strandat 738.171 kb on + strandat 738.172 kb on - strandat 738.297 kb on + strand, within AMB_RS03515at 738.297 kb on + strand, within AMB_RS03515at 738.297 kb on + strand, within AMB_RS03515at 738.297 kb on + strand, within AMB_RS03515at 738.298 kb on - strand, within AMB_RS03515at 738.298 kb on - strand, within AMB_RS03515at 738.400 kb on - strand, within AMB_RS03515at 738.406 kb on + strand, within AMB_RS03515at 738.406 kb on + strand, within AMB_RS03515at 738.407 kb on - strand, within AMB_RS03515at 738.446 kb on + strand, within AMB_RS03515at 738.446 kb on + strand, within AMB_RS03515at 738.446 kb on + strand, within AMB_RS03515at 738.446 kb on + strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.447 kb on - strand, within AMB_RS03515at 738.475 kb on - strand, within AMB_RS03515at 738.475 kb on - strand, within AMB_RS03515at 738.648 kb on + strand, within AMB_RS03515at 738.648 kb on + strand, within AMB_RS03515at 738.648 kb on + strand, within AMB_RS03515at 738.648 kb on + strand, within AMB_RS03515at 738.648 kb on + strand, within AMB_RS03515at 738.648 kb on + strand, within AMB_RS03515at 738.648 kb on + strand, within AMB_RS03515at 738.649 kb on - strand, within AMB_RS03515at 738.649 kb on - strand, within AMB_RS03515at 738.649 kb on - strand, within AMB_RS03515at 738.649 kb on - strand, within AMB_RS03515at 738.650 kb on + strand, within AMB_RS03515at 738.650 kb on + strand, within AMB_RS03515at 738.650 kb on + strand, within AMB_RS03515at 738.651 kb on - strand, within AMB_RS03515at 738.651 kb on - strand, within AMB_RS03515at 738.759 kb on + strand, within AMB_RS03515at 738.759 kb on + strand, within AMB_RS03515at 738.759 kb on + strand, within AMB_RS03515at 738.760 kb on - strand, within AMB_RS03515at 738.784 kb on - strand, within AMB_RS03515at 738.784 kb on - strand, within AMB_RS03515

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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735,772 + +0.1
735,773 - +0.3
735,919 - -2.5
736,105 - +0.4
736,105 - -1.0
736,177 + +0.0
736,177 + -2.0
736,177 + +3.6
736,177 + -2.0
736,177 + -0.4
736,178 - -3.5
736,213 + -0.4
736,213 + -0.8
736,213 + -1.8
736,213 + -4.7
736,214 - -1.1
736,229 + -0.4
736,230 - +0.3
736,248 - -3.2
736,248 - -1.9
736,248 - -3.5
736,833 + AMB_RS03510 0.38 +0.0
736,834 - AMB_RS03510 0.38 -0.2
736,869 + AMB_RS03510 0.40 -1.6
736,870 - AMB_RS03510 0.40 -0.7
736,881 + AMB_RS03510 0.41 -0.4
736,912 - AMB_RS03510 0.43 -2.6
737,185 - AMB_RS03510 0.60 +1.1
737,185 - AMB_RS03510 0.60 -1.8
737,186 + AMB_RS03510 0.60 -1.5
737,187 - AMB_RS03510 0.60 -0.1
737,415 + AMB_RS03510 0.75 -3.0
737,416 - AMB_RS03510 0.75 +3.2
737,430 + AMB_RS03510 0.76 -2.0
737,430 + AMB_RS03510 0.76 -3.8
737,433 + AMB_RS03510 0.76 -3.0
737,433 + AMB_RS03510 0.76 -2.3
737,460 + AMB_RS03510 0.78 -2.7
737,461 - AMB_RS03510 0.78 -3.9
737,461 - AMB_RS03510 0.78 -0.2
737,497 - AMB_RS03510 0.80 -3.2
737,511 + AMB_RS03510 0.81 -0.9
737,512 - AMB_RS03510 0.81 +1.0
737,512 - AMB_RS03510 0.81 -2.2
737,512 - AMB_RS03510 0.81 -1.5
737,655 + AMB_RS03510 0.90 -3.4
737,656 - AMB_RS03510 0.90 -2.3
737,656 - AMB_RS03510 0.90 -2.0
737,656 - AMB_RS03510 0.90 +2.6
737,814 + -0.4
737,814 + +0.9
737,815 - -3.2
737,829 - +0.5
737,829 - +0.1
737,829 - +1.0
737,975 - -4.0
737,975 - +0.0
738,171 + -1.3
738,171 + -1.3
738,172 - -2.6
738,297 + AMB_RS03515 0.15 +0.2
738,297 + AMB_RS03515 0.15 -1.0
738,297 + AMB_RS03515 0.15 -3.5
738,297 + AMB_RS03515 0.15 -1.6
738,298 - AMB_RS03515 0.15 -0.2
738,298 - AMB_RS03515 0.15 -1.9
738,400 - AMB_RS03515 0.20 -3.3
738,406 + AMB_RS03515 0.20 -1.0
738,406 + AMB_RS03515 0.20 -0.6
738,407 - AMB_RS03515 0.20 -3.5
738,446 + AMB_RS03515 0.22 +1.2
738,446 + AMB_RS03515 0.22 -0.3
738,446 + AMB_RS03515 0.22 +1.3
738,446 + AMB_RS03515 0.22 -3.1
738,447 - AMB_RS03515 0.22 +0.8
738,447 - AMB_RS03515 0.22 -0.7
738,447 - AMB_RS03515 0.22 -1.4
738,447 - AMB_RS03515 0.22 -0.1
738,447 - AMB_RS03515 0.22 +0.7
738,447 - AMB_RS03515 0.22 +0.8
738,447 - AMB_RS03515 0.22 +0.6
738,447 - AMB_RS03515 0.22 +0.1
738,447 - AMB_RS03515 0.22 -0.3
738,475 - AMB_RS03515 0.24 -2.8
738,475 - AMB_RS03515 0.24 +0.5
738,648 + AMB_RS03515 0.32 +0.7
738,648 + AMB_RS03515 0.32 +0.5
738,648 + AMB_RS03515 0.32 -0.1
738,648 + AMB_RS03515 0.32 -2.7
738,648 + AMB_RS03515 0.32 -3.5
738,648 + AMB_RS03515 0.32 -2.5
738,648 + AMB_RS03515 0.32 -0.0
738,649 - AMB_RS03515 0.32 -3.4
738,649 - AMB_RS03515 0.32 +1.0
738,649 - AMB_RS03515 0.32 -0.4
738,649 - AMB_RS03515 0.32 -0.7
738,650 + AMB_RS03515 0.32 +0.5
738,650 + AMB_RS03515 0.32 +0.2
738,650 + AMB_RS03515 0.32 -0.6
738,651 - AMB_RS03515 0.32 +1.9
738,651 - AMB_RS03515 0.32 -2.3
738,759 + AMB_RS03515 0.38 -2.6
738,759 + AMB_RS03515 0.38 +0.7
738,759 + AMB_RS03515 0.38 -1.0
738,760 - AMB_RS03515 0.38 +1.2
738,784 - AMB_RS03515 0.39 +0.4
738,784 - AMB_RS03515 0.39 +0.0

Or see this region's nucleotide sequence