Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03495

Experiment: 150_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS03485 and AMB_RS03490 overlap by 4 nucleotidesAMB_RS03490 and AMB_RS03495 are separated by 183 nucleotidesAMB_RS03495 and AMB_RS03500 are separated by 48 nucleotides AMB_RS03485: AMB_RS03485 - AEC family transporter, at 729,218 to 730,156 _RS03485 AMB_RS03490: AMB_RS03490 - cAMP-binding protein, at 730,153 to 730,554 _RS03490 AMB_RS03495: AMB_RS03495 - alpha/beta hydrolase, at 730,738 to 731,874 _RS03495 AMB_RS03500: AMB_RS03500 - DNA-protecting protein DprA, at 731,923 to 733,050 _RS03500 Position (kb) 730 731 732Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 729.807 kb on - strand, within AMB_RS03485at 729.822 kb on + strand, within AMB_RS03485at 729.822 kb on + strand, within AMB_RS03485at 729.822 kb on + strand, within AMB_RS03485at 729.822 kb on + strand, within AMB_RS03485at 729.822 kb on + strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 729.823 kb on - strand, within AMB_RS03485at 730.463 kb on + strand, within AMB_RS03490at 730.463 kb on + strand, within AMB_RS03490at 730.464 kb on - strand, within AMB_RS03490at 730.594 kb on + strandat 730.594 kb on + strandat 730.595 kb on - strandat 730.654 kb on + strandat 730.846 kb on - strandat 730.906 kb on + strand, within AMB_RS03495at 730.906 kb on + strand, within AMB_RS03495at 730.907 kb on - strand, within AMB_RS03495at 730.907 kb on - strand, within AMB_RS03495at 730.907 kb on - strand, within AMB_RS03495at 730.907 kb on - strand, within AMB_RS03495at 730.907 kb on - strand, within AMB_RS03495at 730.907 kb on - strand, within AMB_RS03495at 730.907 kb on - strand, within AMB_RS03495at 731.124 kb on + strand, within AMB_RS03495at 731.125 kb on - strand, within AMB_RS03495at 731.155 kb on + strand, within AMB_RS03495at 731.155 kb on + strand, within AMB_RS03495at 731.156 kb on - strand, within AMB_RS03495at 731.156 kb on - strand, within AMB_RS03495at 731.156 kb on - strand, within AMB_RS03495at 731.156 kb on - strand, within AMB_RS03495at 731.368 kb on + strand, within AMB_RS03495at 731.385 kb on + strand, within AMB_RS03495at 731.386 kb on - strand, within AMB_RS03495at 731.695 kb on + strand, within AMB_RS03495at 731.695 kb on + strand, within AMB_RS03495at 731.731 kb on + strand, within AMB_RS03495at 731.732 kb on - strand, within AMB_RS03495at 731.732 kb on - strand, within AMB_RS03495at 731.873 kb on - strandat 732.191 kb on - strand, within AMB_RS03500at 732.358 kb on + strand, within AMB_RS03500at 732.358 kb on + strand, within AMB_RS03500at 732.358 kb on + strand, within AMB_RS03500at 732.359 kb on - strand, within AMB_RS03500at 732.359 kb on - strand, within AMB_RS03500at 732.463 kb on + strand, within AMB_RS03500at 732.463 kb on + strand, within AMB_RS03500at 732.556 kb on + strand, within AMB_RS03500at 732.556 kb on + strand, within AMB_RS03500at 732.556 kb on + strand, within AMB_RS03500at 732.557 kb on - strand, within AMB_RS03500at 732.557 kb on - strand, within AMB_RS03500at 732.557 kb on - strand, within AMB_RS03500at 732.557 kb on - strand, within AMB_RS03500at 732.557 kb on - strand, within AMB_RS03500at 732.861 kb on + strand, within AMB_RS03500

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
remove
729,807 - AMB_RS03485 0.63 -0.0
729,822 + AMB_RS03485 0.64 -1.0
729,822 + AMB_RS03485 0.64 +2.1
729,822 + AMB_RS03485 0.64 +0.9
729,822 + AMB_RS03485 0.64 +0.4
729,822 + AMB_RS03485 0.64 -2.9
729,823 - AMB_RS03485 0.64 +0.2
729,823 - AMB_RS03485 0.64 +3.7
729,823 - AMB_RS03485 0.64 +0.6
729,823 - AMB_RS03485 0.64 +0.6
729,823 - AMB_RS03485 0.64 -2.5
729,823 - AMB_RS03485 0.64 -0.7
729,823 - AMB_RS03485 0.64 +1.3
729,823 - AMB_RS03485 0.64 +1.9
729,823 - AMB_RS03485 0.64 -2.3
729,823 - AMB_RS03485 0.64 -2.9
729,823 - AMB_RS03485 0.64 -1.0
730,463 + AMB_RS03490 0.77 +0.9
730,463 + AMB_RS03490 0.77 +0.0
730,464 - AMB_RS03490 0.77 -0.6
730,594 + -0.6
730,594 + +0.2
730,595 - +0.2
730,654 + +0.6
730,846 - -3.0
730,906 + AMB_RS03495 0.15 -3.3
730,906 + AMB_RS03495 0.15 -2.7
730,907 - AMB_RS03495 0.15 -3.0
730,907 - AMB_RS03495 0.15 -4.0
730,907 - AMB_RS03495 0.15 +0.0
730,907 - AMB_RS03495 0.15 -2.3
730,907 - AMB_RS03495 0.15 -2.8
730,907 - AMB_RS03495 0.15 +0.2
730,907 - AMB_RS03495 0.15 -1.3
731,124 + AMB_RS03495 0.34 +1.5
731,125 - AMB_RS03495 0.34 -0.1
731,155 + AMB_RS03495 0.37 +0.0
731,155 + AMB_RS03495 0.37 +0.5
731,156 - AMB_RS03495 0.37 -1.6
731,156 - AMB_RS03495 0.37 +0.2
731,156 - AMB_RS03495 0.37 -1.8
731,156 - AMB_RS03495 0.37 -1.6
731,368 + AMB_RS03495 0.55 -1.0
731,385 + AMB_RS03495 0.57 -0.6
731,386 - AMB_RS03495 0.57 -2.9
731,695 + AMB_RS03495 0.84 -0.1
731,695 + AMB_RS03495 0.84 -1.3
731,731 + AMB_RS03495 0.87 +0.1
731,732 - AMB_RS03495 0.87 +1.0
731,732 - AMB_RS03495 0.87 -0.5
731,873 - -0.2
732,191 - AMB_RS03500 0.24 -0.8
732,358 + AMB_RS03500 0.39 -2.6
732,358 + AMB_RS03500 0.39 -2.4
732,358 + AMB_RS03500 0.39 +0.7
732,359 - AMB_RS03500 0.39 -0.3
732,359 - AMB_RS03500 0.39 -0.5
732,463 + AMB_RS03500 0.48 -2.5
732,463 + AMB_RS03500 0.48 -1.5
732,556 + AMB_RS03500 0.56 +0.1
732,556 + AMB_RS03500 0.56 -2.0
732,556 + AMB_RS03500 0.56 -0.9
732,557 - AMB_RS03500 0.56 -0.0
732,557 - AMB_RS03500 0.56 -1.8
732,557 - AMB_RS03500 0.56 -1.3
732,557 - AMB_RS03500 0.56 +0.0
732,557 - AMB_RS03500 0.56 -1.4
732,861 + AMB_RS03500 0.83 +0.3

Or see this region's nucleotide sequence