Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02945

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02940 and AMB_RS02945 are separated by 8 nucleotidesAMB_RS02945 and AMB_RS02950 overlap by 1 nucleotides AMB_RS02940: AMB_RS02940 - VWA domain-containing protein, at 616,276 to 617,484 _RS02940 AMB_RS02945: AMB_RS02945 - hemerythrin, at 617,493 to 617,882 _RS02945 AMB_RS02950: AMB_RS02950 - MoxR family ATPase, at 617,882 to 618,727 _RS02950 Position (kb) 617 618Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 616.565 kb on + strand, within AMB_RS02940at 616.565 kb on + strand, within AMB_RS02940at 616.565 kb on + strand, within AMB_RS02940at 616.565 kb on + strand, within AMB_RS02940at 616.566 kb on - strand, within AMB_RS02940at 616.581 kb on + strand, within AMB_RS02940at 616.581 kb on + strand, within AMB_RS02940at 616.581 kb on + strand, within AMB_RS02940at 616.581 kb on + strand, within AMB_RS02940at 616.582 kb on - strand, within AMB_RS02940at 616.582 kb on - strand, within AMB_RS02940at 616.582 kb on - strand, within AMB_RS02940at 616.649 kb on + strand, within AMB_RS02940at 616.667 kb on + strand, within AMB_RS02940at 616.667 kb on + strand, within AMB_RS02940at 616.667 kb on + strand, within AMB_RS02940at 616.668 kb on - strand, within AMB_RS02940at 616.668 kb on - strand, within AMB_RS02940at 616.699 kb on + strand, within AMB_RS02940at 617.037 kb on + strand, within AMB_RS02940at 617.039 kb on + strand, within AMB_RS02940at 617.039 kb on + strand, within AMB_RS02940at 617.039 kb on + strand, within AMB_RS02940at 617.039 kb on + strand, within AMB_RS02940at 617.040 kb on - strand, within AMB_RS02940at 617.045 kb on + strand, within AMB_RS02940at 617.046 kb on - strand, within AMB_RS02940at 617.046 kb on - strand, within AMB_RS02940at 617.338 kb on + strand, within AMB_RS02940at 617.360 kb on + strand, within AMB_RS02940at 617.360 kb on + strand, within AMB_RS02940at 617.360 kb on + strand, within AMB_RS02940at 617.361 kb on - strand, within AMB_RS02940at 617.361 kb on - strand, within AMB_RS02940at 617.363 kb on + strand, within AMB_RS02940at 617.363 kb on + strand, within AMB_RS02940at 617.363 kb on + strand, within AMB_RS02940at 617.363 kb on + strand, within AMB_RS02940at 617.363 kb on + strand, within AMB_RS02940at 617.363 kb on + strand, within AMB_RS02940at 617.363 kb on + strand, within AMB_RS02940at 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.364 kb on - strandat 617.423 kb on + strandat 617.424 kb on - strandat 617.424 kb on - strandat 617.589 kb on - strand, within AMB_RS02945at 617.617 kb on + strand, within AMB_RS02945at 617.740 kb on + strand, within AMB_RS02945at 617.740 kb on + strand, within AMB_RS02945at 617.741 kb on - strand, within AMB_RS02945at 617.741 kb on - strand, within AMB_RS02945at 618.108 kb on - strand, within AMB_RS02950at 618.150 kb on + strand, within AMB_RS02950at 618.150 kb on + strand, within AMB_RS02950at 618.201 kb on + strand, within AMB_RS02950at 618.201 kb on + strand, within AMB_RS02950at 618.201 kb on + strand, within AMB_RS02950at 618.201 kb on + strand, within AMB_RS02950at 618.201 kb on + strand, within AMB_RS02950at 618.202 kb on - strand, within AMB_RS02950at 618.202 kb on - strand, within AMB_RS02950at 618.202 kb on - strand, within AMB_RS02950at 618.309 kb on + strand, within AMB_RS02950at 618.310 kb on - strand, within AMB_RS02950at 618.447 kb on + strand, within AMB_RS02950at 618.447 kb on + strand, within AMB_RS02950at 618.447 kb on + strand, within AMB_RS02950at 618.447 kb on + strand, within AMB_RS02950at 618.448 kb on - strand, within AMB_RS02950at 618.448 kb on - strand, within AMB_RS02950at 618.448 kb on - strand, within AMB_RS02950at 618.448 kb on - strand, within AMB_RS02950at 618.448 kb on - strand, within AMB_RS02950at 618.448 kb on - strand, within AMB_RS02950at 618.513 kb on + strand, within AMB_RS02950at 618.513 kb on + strand, within AMB_RS02950at 618.514 kb on - strand, within AMB_RS02950at 618.514 kb on - strand, within AMB_RS02950at 618.519 kb on + strand, within AMB_RS02950at 618.520 kb on - strand, within AMB_RS02950at 618.702 kb on + strandat 618.702 kb on + strandat 618.702 kb on + strandat 618.702 kb on + strandat 618.702 kb on + strandat 618.702 kb on + strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.703 kb on - strandat 618.706 kb on + strandat 618.706 kb on + strandat 618.707 kb on - strandat 618.755 kb on + strandat 618.756 kb on - strandat 618.756 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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616,565 + AMB_RS02940 0.24 +0.2
616,565 + AMB_RS02940 0.24 +1.4
616,565 + AMB_RS02940 0.24 -3.7
616,565 + AMB_RS02940 0.24 -1.3
616,566 - AMB_RS02940 0.24 +0.5
616,581 + AMB_RS02940 0.25 +0.8
616,581 + AMB_RS02940 0.25 +1.0
616,581 + AMB_RS02940 0.25 -1.3
616,581 + AMB_RS02940 0.25 -3.1
616,582 - AMB_RS02940 0.25 -4.4
616,582 - AMB_RS02940 0.25 -1.0
616,582 - AMB_RS02940 0.25 -3.1
616,649 + AMB_RS02940 0.31 +0.5
616,667 + AMB_RS02940 0.32 -3.2
616,667 + AMB_RS02940 0.32 -1.6
616,667 + AMB_RS02940 0.32 +1.3
616,668 - AMB_RS02940 0.32 +2.5
616,668 - AMB_RS02940 0.32 -0.4
616,699 + AMB_RS02940 0.35 +0.8
617,037 + AMB_RS02940 0.63 -2.9
617,039 + AMB_RS02940 0.63 -4.3
617,039 + AMB_RS02940 0.63 +1.2
617,039 + AMB_RS02940 0.63 -0.2
617,039 + AMB_RS02940 0.63 -1.8
617,040 - AMB_RS02940 0.63 -2.7
617,045 + AMB_RS02940 0.64 -2.8
617,046 - AMB_RS02940 0.64 -4.0
617,046 - AMB_RS02940 0.64 -2.6
617,338 + AMB_RS02940 0.88 -4.0
617,360 + AMB_RS02940 0.90 +0.4
617,360 + AMB_RS02940 0.90 -4.4
617,360 + AMB_RS02940 0.90 +0.9
617,361 - AMB_RS02940 0.90 +3.1
617,361 - AMB_RS02940 0.90 +1.4
617,363 + AMB_RS02940 0.90 -1.0
617,363 + AMB_RS02940 0.90 -2.9
617,363 + AMB_RS02940 0.90 -2.3
617,363 + AMB_RS02940 0.90 -0.8
617,363 + AMB_RS02940 0.90 +0.2
617,363 + AMB_RS02940 0.90 -1.8
617,363 + AMB_RS02940 0.90 +0.5
617,364 - -0.8
617,364 - -0.7
617,364 - -0.1
617,364 - -1.0
617,364 - +1.6
617,364 - -3.4
617,364 - -2.9
617,364 - -1.8
617,364 - +0.4
617,364 - +0.4
617,423 + +3.9
617,424 - -0.2
617,424 - -0.6
617,589 - AMB_RS02945 0.25 -1.2
617,617 + AMB_RS02945 0.32 +0.7
617,740 + AMB_RS02945 0.63 -2.4
617,740 + AMB_RS02945 0.63 -0.2
617,741 - AMB_RS02945 0.64 -0.0
617,741 - AMB_RS02945 0.64 +0.4
618,108 - AMB_RS02950 0.27 +0.1
618,150 + AMB_RS02950 0.32 +1.2
618,150 + AMB_RS02950 0.32 +1.1
618,201 + AMB_RS02950 0.38 -1.4
618,201 + AMB_RS02950 0.38 +0.2
618,201 + AMB_RS02950 0.38 +0.2
618,201 + AMB_RS02950 0.38 +0.1
618,201 + AMB_RS02950 0.38 -1.4
618,202 - AMB_RS02950 0.38 -1.6
618,202 - AMB_RS02950 0.38 -4.0
618,202 - AMB_RS02950 0.38 +0.9
618,309 + AMB_RS02950 0.50 +0.5
618,310 - AMB_RS02950 0.51 +0.0
618,447 + AMB_RS02950 0.67 -0.6
618,447 + AMB_RS02950 0.67 -0.2
618,447 + AMB_RS02950 0.67 +1.1
618,447 + AMB_RS02950 0.67 -4.8
618,448 - AMB_RS02950 0.67 -0.1
618,448 - AMB_RS02950 0.67 +1.3
618,448 - AMB_RS02950 0.67 -2.4
618,448 - AMB_RS02950 0.67 +1.4
618,448 - AMB_RS02950 0.67 -1.8
618,448 - AMB_RS02950 0.67 -1.6
618,513 + AMB_RS02950 0.75 -3.9
618,513 + AMB_RS02950 0.75 -2.3
618,514 - AMB_RS02950 0.75 -0.4
618,514 - AMB_RS02950 0.75 -1.1
618,519 + AMB_RS02950 0.75 -3.2
618,520 - AMB_RS02950 0.75 -3.3
618,702 + +0.3
618,702 + -2.9
618,702 + -1.4
618,702 + -1.5
618,702 + -3.5
618,702 + -3.1
618,703 - -1.8
618,703 - -1.6
618,703 - -0.5
618,703 - +0.7
618,703 - -0.5
618,703 - +2.6
618,703 - +1.0
618,703 - -0.8
618,703 - -3.3
618,706 + +1.2
618,706 + +1.0
618,707 - -1.6
618,755 + +0.0
618,756 - -0.6
618,756 - -1.6

Or see this region's nucleotide sequence