Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02060

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23845 and AMB_RS02050 are separated by 60 nucleotidesAMB_RS02050 and AMB_RS02055 overlap by 4 nucleotidesAMB_RS02055 and AMB_RS02060 are separated by 95 nucleotidesAMB_RS02060 and AMB_RS23105 overlap by 95 nucleotidesAMB_RS23105 and AMB_RS23850 overlap by 24 nucleotidesAMB_RS23850 and AMB_RS02075 are separated by 36 nucleotides AMB_RS23845: AMB_RS23845 - hypothetical protein, at 433,821 to 433,973 _RS23845 AMB_RS02050: AMB_RS02050 - transposase, at 434,034 to 434,384 _RS02050 AMB_RS02055: AMB_RS02055 - IS66 family insertion sequence hypothetical protein, at 434,381 to 434,728 _RS02055 AMB_RS02060: AMB_RS02060 - transposase, at 434,824 to 436,361 _RS02060 AMB_RS23105: AMB_RS23105 - YecA family protein, at 436,267 to 436,824 _RS23105 AMB_RS23850: AMB_RS23850 - IS66 family transposase, at 436,801 to 437,190 _RS23850 AMB_RS02075: AMB_RS02075 - IS66 family insertion sequence hypothetical protein, at 437,227 to 437,574 _RS02075 Position (kb) 434 435 436 437Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 433.827 kb on + strandat 433.827 kb on + strandat 433.898 kb on + strand, within AMB_RS23845at 433.898 kb on + strand, within AMB_RS23845at 433.898 kb on + strand, within AMB_RS23845at 433.899 kb on - strand, within AMB_RS23845at 433.899 kb on - strand, within AMB_RS23845at 433.933 kb on + strand, within AMB_RS23845at 433.934 kb on - strand, within AMB_RS23845at 433.968 kb on + strandat 433.968 kb on + strandat 433.968 kb on + strandat 433.968 kb on + strandat 433.969 kb on - strandat 433.969 kb on - strandat 434.181 kb on + strand, within AMB_RS02050at 434.230 kb on + strand, within AMB_RS02050at 434.231 kb on - strand, within AMB_RS02050at 434.231 kb on - strand, within AMB_RS02050at 434.231 kb on - strand, within AMB_RS02050at 434.231 kb on - strand, within AMB_RS02050at 434.231 kb on - strand, within AMB_RS02050at 434.231 kb on - strand, within AMB_RS02050at 434.231 kb on - strand, within AMB_RS02050at 434.663 kb on + strand, within AMB_RS02055at 435.063 kb on + strand, within AMB_RS02060at 435.063 kb on + strand, within AMB_RS02060at 435.365 kb on + strand, within AMB_RS02060at 435.365 kb on + strand, within AMB_RS02060at 435.365 kb on + strand, within AMB_RS02060at 435.366 kb on - strand, within AMB_RS02060at 435.366 kb on - strand, within AMB_RS02060at 435.612 kb on - strand, within AMB_RS02060at 435.612 kb on - strand, within AMB_RS02060at 435.612 kb on - strand, within AMB_RS02060at 435.670 kb on + strand, within AMB_RS02060at 435.670 kb on + strand, within AMB_RS02060at 435.671 kb on - strand, within AMB_RS02060at 435.671 kb on - strand, within AMB_RS02060at 435.671 kb on - strand, within AMB_RS02060at 435.671 kb on - strand, within AMB_RS02060at 435.671 kb on - strand, within AMB_RS02060at 435.772 kb on + strand, within AMB_RS02060at 435.773 kb on - strand, within AMB_RS02060at 435.923 kb on + strand, within AMB_RS02060at 436.047 kb on + strand, within AMB_RS02060at 436.048 kb on - strand, within AMB_RS02060at 436.209 kb on + strandat 436.209 kb on + strandat 436.209 kb on + strandat 436.209 kb on + strandat 436.209 kb on + strandat 436.210 kb on - strandat 436.210 kb on - strandat 436.210 kb on - strandat 436.210 kb on - strandat 436.374 kb on + strand, within AMB_RS23105at 436.425 kb on + strand, within AMB_RS23105at 436.425 kb on + strand, within AMB_RS23105at 436.425 kb on + strand, within AMB_RS23105at 436.425 kb on + strand, within AMB_RS23105at 436.425 kb on + strand, within AMB_RS23105at 436.425 kb on + strand, within AMB_RS23105at 436.425 kb on + strand, within AMB_RS23105at 436.425 kb on + strand, within AMB_RS23105at 436.425 kb on + strand, within AMB_RS23105at 436.426 kb on - strand, within AMB_RS23105at 436.426 kb on - strand, within AMB_RS23105at 436.426 kb on - strand, within AMB_RS23105at 436.426 kb on - strand, within AMB_RS23105at 436.426 kb on - strand, within AMB_RS23105at 436.426 kb on - strand, within AMB_RS23105at 436.426 kb on - strand, within AMB_RS23105at 436.426 kb on - strand, within AMB_RS23105at 436.426 kb on - strand, within AMB_RS23105at 436.426 kb on - strand, within AMB_RS23105at 436.585 kb on + strand, within AMB_RS23105at 436.585 kb on + strand, within AMB_RS23105at 436.585 kb on + strand, within AMB_RS23105at 436.586 kb on - strand, within AMB_RS23105at 436.586 kb on - strand, within AMB_RS23105at 436.674 kb on - strand, within AMB_RS23105

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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433,827 + +1.1
433,827 + -3.0
433,898 + AMB_RS23845 0.50 -2.9
433,898 + AMB_RS23845 0.50 -1.8
433,898 + AMB_RS23845 0.50 -0.6
433,899 - AMB_RS23845 0.51 -2.8
433,899 - AMB_RS23845 0.51 -0.6
433,933 + AMB_RS23845 0.73 -1.1
433,934 - AMB_RS23845 0.74 -0.6
433,968 + -1.3
433,968 + -2.7
433,968 + +0.7
433,968 + -2.7
433,969 - -0.3
433,969 - +1.5
434,181 + AMB_RS02050 0.42 -0.6
434,230 + AMB_RS02050 0.56 -2.3
434,231 - AMB_RS02050 0.56 +0.3
434,231 - AMB_RS02050 0.56 -1.3
434,231 - AMB_RS02050 0.56 +0.3
434,231 - AMB_RS02050 0.56 +0.8
434,231 - AMB_RS02050 0.56 -0.2
434,231 - AMB_RS02050 0.56 -0.8
434,231 - AMB_RS02050 0.56 -2.7
434,663 + AMB_RS02055 0.81 -0.8
435,063 + AMB_RS02060 0.16 -3.3
435,063 + AMB_RS02060 0.16 -0.1
435,365 + AMB_RS02060 0.35 -0.4
435,365 + AMB_RS02060 0.35 -0.2
435,365 + AMB_RS02060 0.35 -0.1
435,366 - AMB_RS02060 0.35 -3.1
435,366 - AMB_RS02060 0.35 +0.6
435,612 - AMB_RS02060 0.51 -0.2
435,612 - AMB_RS02060 0.51 -0.0
435,612 - AMB_RS02060 0.51 +0.5
435,670 + AMB_RS02060 0.55 -0.6
435,670 + AMB_RS02060 0.55 -0.5
435,671 - AMB_RS02060 0.55 +0.8
435,671 - AMB_RS02060 0.55 -3.3
435,671 - AMB_RS02060 0.55 -0.3
435,671 - AMB_RS02060 0.55 -2.3
435,671 - AMB_RS02060 0.55 -1.1
435,772 + AMB_RS02060 0.62 -0.3
435,773 - AMB_RS02060 0.62 -3.1
435,923 + AMB_RS02060 0.71 -0.4
436,047 + AMB_RS02060 0.80 -0.6
436,048 - AMB_RS02060 0.80 +0.6
436,209 + +1.3
436,209 + -1.8
436,209 + -1.2
436,209 + -2.7
436,209 + -1.3
436,210 - -0.4
436,210 - -1.0
436,210 - +1.4
436,210 - -0.1
436,374 + AMB_RS23105 0.19 -4.2
436,425 + AMB_RS23105 0.28 -3.5
436,425 + AMB_RS23105 0.28 +1.0
436,425 + AMB_RS23105 0.28 -0.5
436,425 + AMB_RS23105 0.28 -2.5
436,425 + AMB_RS23105 0.28 +0.4
436,425 + AMB_RS23105 0.28 +1.5
436,425 + AMB_RS23105 0.28 +0.1
436,425 + AMB_RS23105 0.28 +0.1
436,425 + AMB_RS23105 0.28 -1.6
436,426 - AMB_RS23105 0.28 +1.3
436,426 - AMB_RS23105 0.28 +2.2
436,426 - AMB_RS23105 0.28 -2.1
436,426 - AMB_RS23105 0.28 +1.6
436,426 - AMB_RS23105 0.28 +3.5
436,426 - AMB_RS23105 0.28 -2.7
436,426 - AMB_RS23105 0.28 -3.2
436,426 - AMB_RS23105 0.28 -1.1
436,426 - AMB_RS23105 0.28 -0.3
436,426 - AMB_RS23105 0.28 +2.1
436,585 + AMB_RS23105 0.57 -0.4
436,585 + AMB_RS23105 0.57 -2.5
436,585 + AMB_RS23105 0.57 +2.6
436,586 - AMB_RS23105 0.57 -3.1
436,586 - AMB_RS23105 0.57 -3.5
436,674 - AMB_RS23105 0.73 -0.4

Or see this region's nucleotide sequence