Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01895

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01890 and AMB_RS01895 are separated by 2 nucleotidesAMB_RS01895 and AMB_RS01900 are separated by 2 nucleotides AMB_RS01890: AMB_RS01890 - phage terminase large subunit family protein, at 402,077 to 404,062 _RS01890 AMB_RS01895: AMB_RS01895 - hypothetical protein, at 404,065 to 404,274 _RS01895 AMB_RS01900: AMB_RS01900 - phage portal protein, at 404,277 to 405,707 _RS01900 Position (kb) 404 405Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 403.469 kb on + strand, within AMB_RS01890at 403.487 kb on + strand, within AMB_RS01890at 403.512 kb on + strand, within AMB_RS01890at 403.512 kb on + strand, within AMB_RS01890at 403.513 kb on - strand, within AMB_RS01890at 403.580 kb on + strand, within AMB_RS01890at 403.580 kb on + strand, within AMB_RS01890at 403.580 kb on + strand, within AMB_RS01890at 403.580 kb on + strand, within AMB_RS01890at 403.580 kb on + strand, within AMB_RS01890at 403.580 kb on + strand, within AMB_RS01890at 403.580 kb on + strand, within AMB_RS01890at 403.580 kb on + strand, within AMB_RS01890at 403.580 kb on + strand, within AMB_RS01890at 403.580 kb on + strand, within AMB_RS01890at 403.580 kb on + strand, within AMB_RS01890at 403.581 kb on - strand, within AMB_RS01890at 403.581 kb on - strand, within AMB_RS01890at 403.581 kb on - strand, within AMB_RS01890at 403.581 kb on - strand, within AMB_RS01890at 403.667 kb on + strand, within AMB_RS01890at 403.668 kb on - strand, within AMB_RS01890at 403.668 kb on - strand, within AMB_RS01890at 403.668 kb on - strand, within AMB_RS01890at 403.673 kb on + strand, within AMB_RS01890at 403.673 kb on + strand, within AMB_RS01890at 403.674 kb on - strand, within AMB_RS01890at 403.883 kb on + strandat 403.884 kb on - strandat 404.161 kb on + strand, within AMB_RS01895at 404.161 kb on + strand, within AMB_RS01895at 404.208 kb on + strand, within AMB_RS01895at 404.430 kb on + strand, within AMB_RS01900at 404.451 kb on + strand, within AMB_RS01900at 404.451 kb on + strand, within AMB_RS01900at 404.823 kb on + strand, within AMB_RS01900at 404.824 kb on - strand, within AMB_RS01900at 404.997 kb on + strand, within AMB_RS01900at 404.998 kb on - strand, within AMB_RS01900at 405.039 kb on + strand, within AMB_RS01900at 405.039 kb on + strand, within AMB_RS01900at 405.039 kb on + strand, within AMB_RS01900at 405.039 kb on + strand, within AMB_RS01900at 405.039 kb on + strand, within AMB_RS01900at 405.040 kb on - strand, within AMB_RS01900at 405.040 kb on - strand, within AMB_RS01900at 405.040 kb on - strand, within AMB_RS01900at 405.040 kb on - strand, within AMB_RS01900at 405.040 kb on - strand, within AMB_RS01900at 405.142 kb on + strand, within AMB_RS01900at 405.142 kb on + strand, within AMB_RS01900at 405.142 kb on + strand, within AMB_RS01900at 405.142 kb on + strand, within AMB_RS01900at 405.143 kb on - strand, within AMB_RS01900at 405.143 kb on - strand, within AMB_RS01900at 405.143 kb on - strand, within AMB_RS01900at 405.143 kb on - strand, within AMB_RS01900at 405.143 kb on - strand, within AMB_RS01900at 405.204 kb on + strand, within AMB_RS01900at 405.204 kb on + strand, within AMB_RS01900at 405.204 kb on + strand, within AMB_RS01900at 405.205 kb on - strand, within AMB_RS01900at 405.205 kb on - strand, within AMB_RS01900at 405.262 kb on - strand, within AMB_RS01900at 405.262 kb on - strand, within AMB_RS01900

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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403,469 + AMB_RS01890 0.70 -0.2
403,487 + AMB_RS01890 0.71 -4.1
403,512 + AMB_RS01890 0.72 -1.0
403,512 + AMB_RS01890 0.72 -1.6
403,513 - AMB_RS01890 0.72 -0.7
403,580 + AMB_RS01890 0.76 +0.5
403,580 + AMB_RS01890 0.76 +0.8
403,580 + AMB_RS01890 0.76 -0.7
403,580 + AMB_RS01890 0.76 -1.8
403,580 + AMB_RS01890 0.76 -3.4
403,580 + AMB_RS01890 0.76 +0.2
403,580 + AMB_RS01890 0.76 +0.1
403,580 + AMB_RS01890 0.76 -0.7
403,580 + AMB_RS01890 0.76 +1.9
403,580 + AMB_RS01890 0.76 +1.0
403,580 + AMB_RS01890 0.76 -1.8
403,581 - AMB_RS01890 0.76 -0.5
403,581 - AMB_RS01890 0.76 -0.8
403,581 - AMB_RS01890 0.76 -2.2
403,581 - AMB_RS01890 0.76 +1.0
403,667 + AMB_RS01890 0.80 -1.1
403,668 - AMB_RS01890 0.80 -3.8
403,668 - AMB_RS01890 0.80 -0.8
403,668 - AMB_RS01890 0.80 -0.1
403,673 + AMB_RS01890 0.80 -0.9
403,673 + AMB_RS01890 0.80 -0.3
403,674 - AMB_RS01890 0.80 +0.6
403,883 + -2.6
403,884 - +0.9
404,161 + AMB_RS01895 0.46 -3.7
404,161 + AMB_RS01895 0.46 -2.4
404,208 + AMB_RS01895 0.68 -0.6
404,430 + AMB_RS01900 0.11 -1.8
404,451 + AMB_RS01900 0.12 -0.2
404,451 + AMB_RS01900 0.12 -1.0
404,823 + AMB_RS01900 0.38 +0.5
404,824 - AMB_RS01900 0.38 -1.0
404,997 + AMB_RS01900 0.50 -2.2
404,998 - AMB_RS01900 0.50 +1.0
405,039 + AMB_RS01900 0.53 -2.7
405,039 + AMB_RS01900 0.53 +0.5
405,039 + AMB_RS01900 0.53 -2.0
405,039 + AMB_RS01900 0.53 +0.3
405,039 + AMB_RS01900 0.53 +0.5
405,040 - AMB_RS01900 0.53 -3.5
405,040 - AMB_RS01900 0.53 +0.1
405,040 - AMB_RS01900 0.53 -2.5
405,040 - AMB_RS01900 0.53 +0.0
405,040 - AMB_RS01900 0.53 -2.7
405,142 + AMB_RS01900 0.60 +1.5
405,142 + AMB_RS01900 0.60 +0.2
405,142 + AMB_RS01900 0.60 -2.3
405,142 + AMB_RS01900 0.60 -2.9
405,143 - AMB_RS01900 0.61 -3.1
405,143 - AMB_RS01900 0.61 -0.9
405,143 - AMB_RS01900 0.61 -0.4
405,143 - AMB_RS01900 0.61 +1.8
405,143 - AMB_RS01900 0.61 -2.8
405,204 + AMB_RS01900 0.65 -2.2
405,204 + AMB_RS01900 0.65 +0.4
405,204 + AMB_RS01900 0.65 -1.0
405,205 - AMB_RS01900 0.65 +1.8
405,205 - AMB_RS01900 0.65 -3.8
405,262 - AMB_RS01900 0.69 -2.4
405,262 - AMB_RS01900 0.69 -0.7

Or see this region's nucleotide sequence