Experiment: 150_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01570 and AMB_RS01575 are separated by 204 nucleotides AMB_RS01575 and AMB_RS01580 are separated by 28 nucleotides
AMB_RS01570: AMB_RS01570 - protein meaA, at 349,564 to 351,561
_RS01570
AMB_RS01575: AMB_RS01575 - arsenate reductase (glutaredoxin), at 351,766 to 352,113
_RS01575
AMB_RS01580: AMB_RS01580 - small-conductance mechanosensitive channel, at 352,142 to 353,422
_RS01580
Position (kb) 351
352
353 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 351.052 kb on + strand, within AMB_RS01570 at 351.053 kb on - strand, within AMB_RS01570 at 351.256 kb on + strand, within AMB_RS01570 at 351.257 kb on - strand, within AMB_RS01570 at 351.398 kb on + strand at 351.399 kb on - strand at 351.481 kb on + strand at 351.481 kb on + strand at 351.481 kb on + strand at 351.481 kb on + strand at 351.481 kb on + strand at 351.482 kb on - strand at 351.482 kb on - strand at 351.496 kb on + strand at 351.496 kb on + strand at 351.496 kb on + strand at 351.609 kb on + strand at 351.613 kb on + strand at 351.614 kb on - strand at 351.614 kb on - strand at 351.706 kb on + strand at 351.706 kb on + strand at 351.706 kb on + strand at 351.706 kb on + strand at 351.706 kb on + strand at 351.707 kb on - strand at 351.707 kb on - strand at 351.767 kb on + strand at 351.767 kb on + strand at 352.011 kb on - strand, within AMB_RS01575 at 352.059 kb on + strand, within AMB_RS01575 at 352.060 kb on - strand, within AMB_RS01575 at 352.091 kb on + strand at 352.091 kb on + strand at 352.091 kb on + strand at 352.091 kb on + strand at 352.091 kb on + strand at 352.092 kb on - strand at 352.092 kb on - strand at 352.092 kb on - strand at 352.092 kb on - strand at 352.092 kb on - strand at 352.092 kb on - strand at 352.092 kb on - strand at 352.160 kb on - strand at 352.160 kb on - strand at 352.580 kb on + strand, within AMB_RS01580 at 352.580 kb on + strand, within AMB_RS01580 at 352.581 kb on - strand, within AMB_RS01580 at 352.581 kb on - strand, within AMB_RS01580 at 352.706 kb on + strand, within AMB_RS01580
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_2 remove 351,052 + AMB_RS01570 0.74 -1.8 351,053 - AMB_RS01570 0.75 -2.6 351,256 + AMB_RS01570 0.85 -0.5 351,257 - AMB_RS01570 0.85 -3.0 351,398 + -1.0 351,399 - -0.9 351,481 + -2.9 351,481 + -0.5 351,481 + -3.0 351,481 + +0.0 351,481 + +0.3 351,482 - +0.5 351,482 - -0.4 351,496 + +1.5 351,496 + +2.9 351,496 + +0.2 351,609 + -1.0 351,613 + -0.5 351,614 - -3.2 351,614 - +1.0 351,706 + -1.6 351,706 + -3.6 351,706 + -1.0 351,706 + +0.5 351,706 + -2.6 351,707 - +2.3 351,707 - -0.2 351,767 + +1.5 351,767 + -2.2 352,011 - AMB_RS01575 0.70 -2.0 352,059 + AMB_RS01575 0.84 -1.8 352,060 - AMB_RS01575 0.84 -1.0 352,091 + +0.5 352,091 + -4.2 352,091 + +1.5 352,091 + -2.3 352,091 + +0.1 352,092 - -1.8 352,092 - +0.3 352,092 - +0.0 352,092 - -3.6 352,092 - -0.2 352,092 - -0.4 352,092 - -1.4 352,160 - -0.0 352,160 - +0.3 352,580 + AMB_RS01580 0.34 +0.2 352,580 + AMB_RS01580 0.34 +0.5 352,581 - AMB_RS01580 0.34 -0.1 352,581 - AMB_RS01580 0.34 +1.2 352,706 + AMB_RS01580 0.44 +0.2
Or see this region's nucleotide sequence