Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01190

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01185 and AMB_RS01190 are separated by 192 nucleotidesAMB_RS01190 and AMB_RS01195 are separated by 108 nucleotidesAMB_RS01195 and AMB_RS01200 are separated by 106 nucleotides AMB_RS01185: AMB_RS01185 - HD domain-containing protein, at 262,752 to 264,527 _RS01185 AMB_RS01190: AMB_RS01190 - UbiD family decarboxylase, at 264,720 to 266,234 _RS01190 AMB_RS01195: AMB_RS01195 - DUF4237 domain-containing protein, at 266,343 to 266,819 _RS01195 AMB_RS01200: AMB_RS01200 - DUF4237 domain-containing protein, at 266,926 to 267,396 _RS01200 Position (kb) 264 265 266 267Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 264.082 kb on + strand, within AMB_RS01185at 264.178 kb on + strand, within AMB_RS01185at 264.179 kb on - strand, within AMB_RS01185at 264.179 kb on - strand, within AMB_RS01185at 264.260 kb on + strand, within AMB_RS01185at 264.260 kb on + strand, within AMB_RS01185at 264.260 kb on + strand, within AMB_RS01185at 264.261 kb on - strand, within AMB_RS01185at 264.261 kb on - strand, within AMB_RS01185at 264.261 kb on - strand, within AMB_RS01185at 264.261 kb on - strand, within AMB_RS01185at 264.261 kb on - strand, within AMB_RS01185at 264.262 kb on + strand, within AMB_RS01185at 264.262 kb on + strand, within AMB_RS01185at 264.262 kb on + strand, within AMB_RS01185at 264.262 kb on + strand, within AMB_RS01185at 264.262 kb on + strand, within AMB_RS01185at 264.263 kb on - strand, within AMB_RS01185at 264.263 kb on - strand, within AMB_RS01185at 264.263 kb on - strand, within AMB_RS01185at 264.264 kb on + strand, within AMB_RS01185at 264.264 kb on + strand, within AMB_RS01185at 264.264 kb on + strand, within AMB_RS01185at 264.294 kb on - strand, within AMB_RS01185at 264.379 kb on + strandat 264.517 kb on - strandat 264.517 kb on - strandat 264.517 kb on - strandat 264.550 kb on + strandat 264.577 kb on + strandat 264.577 kb on + strandat 264.577 kb on + strandat 264.578 kb on - strandat 264.618 kb on - strandat 264.621 kb on + strandat 264.621 kb on + strandat 264.621 kb on + strandat 264.621 kb on + strandat 264.622 kb on - strandat 264.622 kb on - strandat 264.622 kb on - strandat 264.622 kb on - strandat 264.622 kb on - strandat 264.622 kb on - strandat 264.624 kb on + strandat 264.646 kb on + strandat 264.647 kb on - strandat 264.685 kb on + strandat 264.686 kb on - strandat 264.719 kb on + strandat 264.719 kb on + strandat 264.720 kb on - strandat 264.720 kb on - strandat 264.720 kb on - strandat 264.954 kb on - strand, within AMB_RS01190at 265.253 kb on + strand, within AMB_RS01190at 265.254 kb on - strand, within AMB_RS01190at 265.272 kb on + strand, within AMB_RS01190at 265.273 kb on - strand, within AMB_RS01190at 265.596 kb on + strand, within AMB_RS01190at 265.615 kb on - strand, within AMB_RS01190at 265.617 kb on + strand, within AMB_RS01190at 265.618 kb on - strand, within AMB_RS01190at 265.618 kb on - strand, within AMB_RS01190at 265.618 kb on - strand, within AMB_RS01190at 265.618 kb on - strand, within AMB_RS01190at 265.618 kb on - strand, within AMB_RS01190at 265.683 kb on + strand, within AMB_RS01190at 265.683 kb on + strand, within AMB_RS01190at 265.683 kb on + strand, within AMB_RS01190at 265.684 kb on - strand, within AMB_RS01190at 265.684 kb on - strand, within AMB_RS01190at 265.684 kb on - strand, within AMB_RS01190at 265.684 kb on - strand, within AMB_RS01190at 265.854 kb on + strand, within AMB_RS01190at 265.914 kb on + strand, within AMB_RS01190at 265.914 kb on + strand, within AMB_RS01190at 265.914 kb on + strand, within AMB_RS01190at 265.915 kb on - strand, within AMB_RS01190at 265.915 kb on - strand, within AMB_RS01190at 265.915 kb on - strand, within AMB_RS01190at 266.043 kb on + strand, within AMB_RS01190at 266.044 kb on - strand, within AMB_RS01190at 266.238 kb on + strandat 266.239 kb on - strandat 266.248 kb on + strandat 266.263 kb on - strandat 266.266 kb on + strandat 266.298 kb on + strandat 266.298 kb on + strandat 266.300 kb on + strandat 266.301 kb on - strandat 266.388 kb on - strandat 266.628 kb on + strand, within AMB_RS01195at 266.629 kb on - strand, within AMB_RS01195at 266.629 kb on - strand, within AMB_RS01195at 266.649 kb on + strand, within AMB_RS01195at 266.649 kb on + strand, within AMB_RS01195at 266.649 kb on + strand, within AMB_RS01195at 266.650 kb on + strand, within AMB_RS01195at 266.651 kb on + strand, within AMB_RS01195at 266.651 kb on + strand, within AMB_RS01195at 266.652 kb on - strand, within AMB_RS01195at 266.658 kb on + strand, within AMB_RS01195at 266.741 kb on + strand, within AMB_RS01195at 266.741 kb on + strand, within AMB_RS01195at 267.054 kb on + strand, within AMB_RS01200at 267.054 kb on + strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.158 kb on - strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.223 kb on + strand, within AMB_RS01200at 267.223 kb on + strand, within AMB_RS01200at 267.223 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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264,082 + AMB_RS01185 0.75 -0.4
264,178 + AMB_RS01185 0.80 -0.8
264,179 - AMB_RS01185 0.80 +1.4
264,179 - AMB_RS01185 0.80 -1.0
264,260 + AMB_RS01185 0.85 -2.4
264,260 + AMB_RS01185 0.85 -1.3
264,260 + AMB_RS01185 0.85 -2.4
264,261 - AMB_RS01185 0.85 +0.9
264,261 - AMB_RS01185 0.85 +0.2
264,261 - AMB_RS01185 0.85 +1.2
264,261 - AMB_RS01185 0.85 -1.8
264,261 - AMB_RS01185 0.85 -3.1
264,262 + AMB_RS01185 0.85 -1.3
264,262 + AMB_RS01185 0.85 +0.0
264,262 + AMB_RS01185 0.85 +1.7
264,262 + AMB_RS01185 0.85 -0.6
264,262 + AMB_RS01185 0.85 -0.1
264,263 - AMB_RS01185 0.85 -1.0
264,263 - AMB_RS01185 0.85 -3.0
264,263 - AMB_RS01185 0.85 -0.6
264,264 + AMB_RS01185 0.85 -3.6
264,264 + AMB_RS01185 0.85 -2.1
264,264 + AMB_RS01185 0.85 -1.8
264,294 - AMB_RS01185 0.87 -1.3
264,379 + -3.9
264,517 - -2.7
264,517 - -0.6
264,517 - -1.0
264,550 + +0.6
264,577 + +0.0
264,577 + -0.4
264,577 + -2.4
264,578 - -2.0
264,618 - -2.9
264,621 + +4.8
264,621 + +0.8
264,621 + +1.1
264,621 + -3.5
264,622 - +3.0
264,622 - -0.2
264,622 - +1.4
264,622 - +0.1
264,622 - +1.4
264,622 - +1.5
264,624 + -2.4
264,646 + -1.3
264,647 - +0.1
264,685 + -2.0
264,686 - -3.5
264,719 + -1.6
264,719 + +1.0
264,720 - -2.3
264,720 - +1.0
264,720 - -0.7
264,954 - AMB_RS01190 0.15 -1.0
265,253 + AMB_RS01190 0.35 +1.0
265,254 - AMB_RS01190 0.35 +0.0
265,272 + AMB_RS01190 0.36 -2.9
265,273 - AMB_RS01190 0.37 -1.6
265,596 + AMB_RS01190 0.58 -1.0
265,615 - AMB_RS01190 0.59 -0.6
265,617 + AMB_RS01190 0.59 -0.6
265,618 - AMB_RS01190 0.59 +1.0
265,618 - AMB_RS01190 0.59 +0.0
265,618 - AMB_RS01190 0.59 -2.0
265,618 - AMB_RS01190 0.59 -2.1
265,618 - AMB_RS01190 0.59 +0.0
265,683 + AMB_RS01190 0.64 -1.6
265,683 + AMB_RS01190 0.64 -2.1
265,683 + AMB_RS01190 0.64 +4.7
265,684 - AMB_RS01190 0.64 +2.4
265,684 - AMB_RS01190 0.64 -1.3
265,684 - AMB_RS01190 0.64 -1.6
265,684 - AMB_RS01190 0.64 -1.6
265,854 + AMB_RS01190 0.75 +0.8
265,914 + AMB_RS01190 0.79 -2.7
265,914 + AMB_RS01190 0.79 +0.9
265,914 + AMB_RS01190 0.79 -2.8
265,915 - AMB_RS01190 0.79 -0.6
265,915 - AMB_RS01190 0.79 -0.5
265,915 - AMB_RS01190 0.79 -2.9
266,043 + AMB_RS01190 0.87 -1.0
266,044 - AMB_RS01190 0.87 -2.4
266,238 + +0.7
266,239 - -3.3
266,248 + -1.6
266,263 - -1.3
266,266 + -3.1
266,298 + +0.0
266,298 + -0.3
266,300 + -3.4
266,301 - -1.3
266,388 - -0.3
266,628 + AMB_RS01195 0.60 -2.6
266,629 - AMB_RS01195 0.60 -1.6
266,629 - AMB_RS01195 0.60 -0.1
266,649 + AMB_RS01195 0.64 -0.5
266,649 + AMB_RS01195 0.64 -0.5
266,649 + AMB_RS01195 0.64 +1.9
266,650 + AMB_RS01195 0.64 -1.3
266,651 + AMB_RS01195 0.65 -1.1
266,651 + AMB_RS01195 0.65 -0.6
266,652 - AMB_RS01195 0.65 -2.0
266,658 + AMB_RS01195 0.66 -1.4
266,741 + AMB_RS01195 0.83 -0.3
266,741 + AMB_RS01195 0.83 -3.9
267,054 + AMB_RS01200 0.27 +1.5
267,054 + AMB_RS01200 0.27 +0.5
267,055 - AMB_RS01200 0.27 -0.7
267,055 - AMB_RS01200 0.27 -0.8
267,055 - AMB_RS01200 0.27 +0.8
267,055 - AMB_RS01200 0.27 -1.6
267,157 + AMB_RS01200 0.49 -2.8
267,157 + AMB_RS01200 0.49 -3.1
267,157 + AMB_RS01200 0.49 +0.6
267,157 + AMB_RS01200 0.49 +0.0
267,157 + AMB_RS01200 0.49 -0.6
267,158 - AMB_RS01200 0.49 -2.1
267,202 + AMB_RS01200 0.59 +0.7
267,202 + AMB_RS01200 0.59 -2.9
267,202 + AMB_RS01200 0.59 -0.0
267,202 + AMB_RS01200 0.59 +0.1
267,202 + AMB_RS01200 0.59 +0.2
267,202 + AMB_RS01200 0.59 -3.1
267,203 - AMB_RS01200 0.59 +0.4
267,203 - AMB_RS01200 0.59 +0.7
267,203 - AMB_RS01200 0.59 +0.7
267,203 - AMB_RS01200 0.59 +1.2
267,203 - AMB_RS01200 0.59 -1.0
267,203 - AMB_RS01200 0.59 +0.8
267,223 + AMB_RS01200 0.63 -0.6
267,223 + AMB_RS01200 0.63 +1.0
267,223 + AMB_RS01200 0.63 -2.4
267,226 + AMB_RS01200 0.64 -3.2
267,226 + AMB_RS01200 0.64 -2.6
267,226 + AMB_RS01200 0.64 -2.7
267,226 + AMB_RS01200 0.64 +0.6
267,226 + AMB_RS01200 0.64 +0.0
267,226 + AMB_RS01200 0.64 -2.1
267,227 - AMB_RS01200 0.64 -0.8
267,227 - AMB_RS01200 0.64 +0.2
267,227 - AMB_RS01200 0.64 +0.9
267,227 - AMB_RS01200 0.64 -2.6
267,233 - AMB_RS01200 0.65 -1.8
267,233 - AMB_RS01200 0.65 -3.3
267,233 - AMB_RS01200 0.65 -4.6
267,233 - AMB_RS01200 0.65 -3.3

Or see this region's nucleotide sequence