Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00435

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00430 and AMB_RS00435 are separated by 97 nucleotidesAMB_RS00435 and AMB_RS00440 are separated by 50 nucleotides AMB_RS00430: AMB_RS00430 - CBS domain-containing protein, at 93,179 to 94,228 _RS00430 AMB_RS00435: AMB_RS00435 - B12-binding domain-containing radical SAM protein, at 94,326 to 96,215 _RS00435 AMB_RS00440: AMB_RS00440 - hypothetical protein, at 96,266 to 98,272 _RS00440 Position (kb) 94 95 96 97Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 94.334 kb on + strandat 94.334 kb on + strandat 94.334 kb on + strandat 94.334 kb on + strandat 94.334 kb on + strandat 94.335 kb on - strandat 94.335 kb on - strandat 94.346 kb on + strandat 94.346 kb on + strandat 94.347 kb on - strandat 94.446 kb on + strandat 94.447 kb on - strandat 94.447 kb on - strandat 94.447 kb on - strandat 94.447 kb on - strandat 94.473 kb on + strandat 94.554 kb on + strand, within AMB_RS00435at 94.554 kb on + strand, within AMB_RS00435at 94.554 kb on + strand, within AMB_RS00435at 94.554 kb on + strand, within AMB_RS00435at 94.555 kb on - strand, within AMB_RS00435at 94.555 kb on - strand, within AMB_RS00435at 94.555 kb on - strand, within AMB_RS00435at 94.555 kb on - strand, within AMB_RS00435at 94.836 kb on + strand, within AMB_RS00435at 94.836 kb on + strand, within AMB_RS00435at 94.836 kb on + strand, within AMB_RS00435at 94.836 kb on + strand, within AMB_RS00435at 94.836 kb on + strand, within AMB_RS00435at 94.836 kb on + strand, within AMB_RS00435at 94.837 kb on - strand, within AMB_RS00435at 94.837 kb on - strand, within AMB_RS00435at 94.837 kb on - strand, within AMB_RS00435at 94.837 kb on - strand, within AMB_RS00435at 94.842 kb on + strand, within AMB_RS00435at 94.843 kb on - strand, within AMB_RS00435at 94.843 kb on - strand, within AMB_RS00435at 94.843 kb on - strand, within AMB_RS00435at 94.887 kb on + strand, within AMB_RS00435at 94.887 kb on + strand, within AMB_RS00435at 94.887 kb on + strand, within AMB_RS00435at 94.887 kb on + strand, within AMB_RS00435at 94.887 kb on + strand, within AMB_RS00435at 94.887 kb on + strand, within AMB_RS00435at 94.887 kb on + strand, within AMB_RS00435at 94.887 kb on + strand, within AMB_RS00435at 94.887 kb on + strand, within AMB_RS00435at 94.887 kb on + strand, within AMB_RS00435at 94.888 kb on - strand, within AMB_RS00435at 94.888 kb on - strand, within AMB_RS00435at 94.888 kb on - strand, within AMB_RS00435at 94.888 kb on - strand, within AMB_RS00435at 94.888 kb on - strand, within AMB_RS00435at 94.888 kb on - strand, within AMB_RS00435at 94.888 kb on - strand, within AMB_RS00435at 94.889 kb on + strand, within AMB_RS00435at 94.889 kb on + strand, within AMB_RS00435at 94.889 kb on + strand, within AMB_RS00435at 94.890 kb on - strand, within AMB_RS00435at 94.890 kb on - strand, within AMB_RS00435at 94.890 kb on - strand, within AMB_RS00435at 94.890 kb on - strand, within AMB_RS00435at 95.000 kb on + strand, within AMB_RS00435at 95.055 kb on + strand, within AMB_RS00435at 95.055 kb on + strand, within AMB_RS00435at 95.055 kb on + strand, within AMB_RS00435at 95.055 kb on + strand, within AMB_RS00435at 95.056 kb on - strand, within AMB_RS00435at 95.056 kb on - strand, within AMB_RS00435at 95.056 kb on - strand, within AMB_RS00435at 95.056 kb on - strand, within AMB_RS00435at 95.056 kb on - strand, within AMB_RS00435at 95.056 kb on - strand, within AMB_RS00435at 95.056 kb on - strand, within AMB_RS00435at 95.057 kb on + strand, within AMB_RS00435at 95.058 kb on - strand, within AMB_RS00435at 95.058 kb on - strand, within AMB_RS00435at 95.058 kb on - strand, within AMB_RS00435at 95.058 kb on - strand, within AMB_RS00435at 95.058 kb on - strand, within AMB_RS00435at 95.058 kb on - strand, within AMB_RS00435at 95.290 kb on - strand, within AMB_RS00435at 95.290 kb on - strand, within AMB_RS00435at 95.523 kb on + strand, within AMB_RS00435at 95.523 kb on + strand, within AMB_RS00435at 95.523 kb on + strand, within AMB_RS00435at 95.524 kb on - strand, within AMB_RS00435at 95.524 kb on - strand, within AMB_RS00435at 95.524 kb on - strand, within AMB_RS00435at 95.524 kb on - strand, within AMB_RS00435at 95.553 kb on + strand, within AMB_RS00435at 95.553 kb on + strand, within AMB_RS00435at 95.554 kb on - strand, within AMB_RS00435at 95.554 kb on - strand, within AMB_RS00435at 95.579 kb on + strand, within AMB_RS00435at 95.579 kb on + strand, within AMB_RS00435at 95.579 kb on + strand, within AMB_RS00435at 95.579 kb on + strand, within AMB_RS00435at 95.580 kb on - strand, within AMB_RS00435at 95.611 kb on - strand, within AMB_RS00435at 95.611 kb on - strand, within AMB_RS00435at 95.611 kb on - strand, within AMB_RS00435at 95.611 kb on - strand, within AMB_RS00435at 95.611 kb on - strand, within AMB_RS00435at 95.611 kb on - strand, within AMB_RS00435at 95.611 kb on - strand, within AMB_RS00435at 95.727 kb on + strand, within AMB_RS00435at 95.727 kb on + strand, within AMB_RS00435at 95.728 kb on - strand, within AMB_RS00435at 95.728 kb on - strand, within AMB_RS00435at 95.728 kb on - strand, within AMB_RS00435at 95.733 kb on + strand, within AMB_RS00435at 95.733 kb on + strand, within AMB_RS00435at 95.733 kb on + strand, within AMB_RS00435at 95.733 kb on + strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.761 kb on - strand, within AMB_RS00435at 95.791 kb on - strand, within AMB_RS00435at 95.796 kb on - strand, within AMB_RS00435at 95.856 kb on - strand, within AMB_RS00435at 95.978 kb on + strand, within AMB_RS00435at 95.981 kb on - strand, within AMB_RS00435at 96.126 kb on + strandat 96.128 kb on + strandat 96.128 kb on + strandat 96.128 kb on + strandat 96.128 kb on + strandat 96.128 kb on + strandat 96.129 kb on - strandat 96.129 kb on - strandat 96.129 kb on - strandat 96.129 kb on - strandat 96.140 kb on + strandat 96.141 kb on - strandat 96.213 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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94,334 + -1.4
94,334 + -1.6
94,334 + +0.7
94,334 + -0.8
94,334 + -3.3
94,335 - +0.4
94,335 - +0.0
94,346 + +0.7
94,346 + -2.6
94,347 - -0.6
94,446 + -0.0
94,447 - -0.6
94,447 - -1.1
94,447 - -3.9
94,447 - +1.7
94,473 + -0.1
94,554 + AMB_RS00435 0.12 +1.0
94,554 + AMB_RS00435 0.12 -3.4
94,554 + AMB_RS00435 0.12 -1.9
94,554 + AMB_RS00435 0.12 -2.3
94,555 - AMB_RS00435 0.12 +0.9
94,555 - AMB_RS00435 0.12 -2.1
94,555 - AMB_RS00435 0.12 -0.6
94,555 - AMB_RS00435 0.12 -1.0
94,836 + AMB_RS00435 0.27 +0.3
94,836 + AMB_RS00435 0.27 -1.8
94,836 + AMB_RS00435 0.27 +0.7
94,836 + AMB_RS00435 0.27 -1.1
94,836 + AMB_RS00435 0.27 -0.3
94,836 + AMB_RS00435 0.27 -1.3
94,837 - AMB_RS00435 0.27 +0.7
94,837 - AMB_RS00435 0.27 -2.0
94,837 - AMB_RS00435 0.27 -3.3
94,837 - AMB_RS00435 0.27 -1.1
94,842 + AMB_RS00435 0.27 -0.8
94,843 - AMB_RS00435 0.27 -2.3
94,843 - AMB_RS00435 0.27 +1.0
94,843 - AMB_RS00435 0.27 -1.3
94,887 + AMB_RS00435 0.30 +0.0
94,887 + AMB_RS00435 0.30 -0.6
94,887 + AMB_RS00435 0.30 -1.3
94,887 + AMB_RS00435 0.30 -3.9
94,887 + AMB_RS00435 0.30 +0.4
94,887 + AMB_RS00435 0.30 -1.3
94,887 + AMB_RS00435 0.30 +2.3
94,887 + AMB_RS00435 0.30 +2.4
94,887 + AMB_RS00435 0.30 +0.3
94,887 + AMB_RS00435 0.30 +0.9
94,888 - AMB_RS00435 0.30 -3.4
94,888 - AMB_RS00435 0.30 +0.5
94,888 - AMB_RS00435 0.30 -2.6
94,888 - AMB_RS00435 0.30 -1.6
94,888 - AMB_RS00435 0.30 -1.8
94,888 - AMB_RS00435 0.30 -1.6
94,888 - AMB_RS00435 0.30 +1.9
94,889 + AMB_RS00435 0.30 -0.8
94,889 + AMB_RS00435 0.30 -1.6
94,889 + AMB_RS00435 0.30 -1.7
94,890 - AMB_RS00435 0.30 -1.8
94,890 - AMB_RS00435 0.30 -2.8
94,890 - AMB_RS00435 0.30 -1.3
94,890 - AMB_RS00435 0.30 -1.6
95,000 + AMB_RS00435 0.36 -2.9
95,055 + AMB_RS00435 0.39 -1.8
95,055 + AMB_RS00435 0.39 -0.6
95,055 + AMB_RS00435 0.39 -1.7
95,055 + AMB_RS00435 0.39 -2.6
95,056 - AMB_RS00435 0.39 -2.1
95,056 - AMB_RS00435 0.39 +1.8
95,056 - AMB_RS00435 0.39 -2.0
95,056 - AMB_RS00435 0.39 -2.3
95,056 - AMB_RS00435 0.39 -2.6
95,056 - AMB_RS00435 0.39 -2.7
95,056 - AMB_RS00435 0.39 -1.1
95,057 + AMB_RS00435 0.39 -0.3
95,058 - AMB_RS00435 0.39 -1.2
95,058 - AMB_RS00435 0.39 -3.1
95,058 - AMB_RS00435 0.39 -4.3
95,058 - AMB_RS00435 0.39 +1.8
95,058 - AMB_RS00435 0.39 +1.3
95,058 - AMB_RS00435 0.39 -3.8
95,290 - AMB_RS00435 0.51 -1.6
95,290 - AMB_RS00435 0.51 -2.3
95,523 + AMB_RS00435 0.63 -0.6
95,523 + AMB_RS00435 0.63 -2.4
95,523 + AMB_RS00435 0.63 +0.0
95,524 - AMB_RS00435 0.63 +0.3
95,524 - AMB_RS00435 0.63 +1.0
95,524 - AMB_RS00435 0.63 -0.6
95,524 - AMB_RS00435 0.63 -1.0
95,553 + AMB_RS00435 0.65 +1.1
95,553 + AMB_RS00435 0.65 +1.5
95,554 - AMB_RS00435 0.65 -0.6
95,554 - AMB_RS00435 0.65 -1.0
95,579 + AMB_RS00435 0.66 -0.1
95,579 + AMB_RS00435 0.66 -2.8
95,579 + AMB_RS00435 0.66 -0.0
95,579 + AMB_RS00435 0.66 +1.4
95,580 - AMB_RS00435 0.66 -3.7
95,611 - AMB_RS00435 0.68 +2.2
95,611 - AMB_RS00435 0.68 -2.1
95,611 - AMB_RS00435 0.68 -0.2
95,611 - AMB_RS00435 0.68 +1.8
95,611 - AMB_RS00435 0.68 +1.0
95,611 - AMB_RS00435 0.68 +0.0
95,611 - AMB_RS00435 0.68 +1.0
95,727 + AMB_RS00435 0.74 +2.3
95,727 + AMB_RS00435 0.74 +1.2
95,728 - AMB_RS00435 0.74 -1.9
95,728 - AMB_RS00435 0.74 +0.0
95,728 - AMB_RS00435 0.74 -0.6
95,733 + AMB_RS00435 0.74 +1.2
95,733 + AMB_RS00435 0.74 +0.1
95,733 + AMB_RS00435 0.74 -0.4
95,733 + AMB_RS00435 0.74 -3.6
95,734 - AMB_RS00435 0.74 -2.0
95,734 - AMB_RS00435 0.74 +0.9
95,734 - AMB_RS00435 0.74 +0.2
95,734 - AMB_RS00435 0.74 -3.9
95,734 - AMB_RS00435 0.74 +0.8
95,734 - AMB_RS00435 0.74 -2.7
95,734 - AMB_RS00435 0.74 -1.8
95,734 - AMB_RS00435 0.74 +1.5
95,761 - AMB_RS00435 0.76 -3.1
95,791 - AMB_RS00435 0.78 -0.6
95,796 - AMB_RS00435 0.78 -1.0
95,856 - AMB_RS00435 0.81 +1.1
95,978 + AMB_RS00435 0.87 +0.1
95,981 - AMB_RS00435 0.88 -4.1
96,126 + +2.3
96,128 + -0.0
96,128 + +0.4
96,128 + -3.8
96,128 + -1.6
96,128 + -0.2
96,129 - -0.9
96,129 - -2.1
96,129 - -1.3
96,129 - -1.1
96,140 + -2.0
96,141 - +1.0
96,213 + +0.1

Or see this region's nucleotide sequence