Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00265

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00260 and AMB_RS00265 overlap by 4 nucleotidesAMB_RS00265 and AMB_RS00270 overlap by 71 nucleotidesAMB_RS00270 and AMB_RS00275 overlap by 8 nucleotides AMB_RS00260: AMB_RS00260 - class I SAM-dependent methyltransferase, at 57,432 to 58,802 _RS00260 AMB_RS00265: AMB_RS00265 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 58,799 to 59,899 _RS00265 AMB_RS00270: AMB_RS00270 - hypothetical protein, at 59,829 to 60,560 _RS00270 AMB_RS00275: AMB_RS00275 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 60,553 to 61,668 _RS00275 Position (kb) 58 59 60Strain fitness (log2 ratio) -3 -2 -1 0 1at 59.897 kb on + strandat 59.897 kb on + strandat 59.897 kb on + strandat 60.535 kb on + strandat 60.536 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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59,897 + -3.0
59,897 + -2.8
59,897 + +0.8
60,535 + -0.2
60,536 - -1.0

Or see this region's nucleotide sequence