Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28095 and ABID97_RS28100 are separated by 65 nucleotides ABID97_RS28100 and ABID97_RS28105 overlap by 4 nucleotides ABID97_RS28105 and ABID97_RS28110 are separated by 200 nucleotides ABID97_RS28110 and ABID97_RS28115 overlap by 36 nucleotides
ABID97_RS28095: ABID97_RS28095 - hypothetical protein, at 536,186 to 536,656
_RS28095
ABID97_RS28100: ABID97_RS28100 - hypothetical protein, at 536,722 to 537,471
_RS28100
ABID97_RS28105: ABID97_RS28105 - SdrD B-like domain-containing protein, at 537,468 to 539,558
_RS28105
ABID97_RS28110: ABID97_RS28110 - hypothetical protein, at 539,759 to 540,025
_RS28110
ABID97_RS28115: ABID97_RS28115 - ATP-binding protein, at 539,990 to 541,990
_RS28115
Position (kb) 537
538
539
540 Strain fitness (log2 ratio) -1
0
1 at 536.646 kb on + strand at 536.697 kb on + strand at 536.698 kb on - strand at 537.127 kb on + strand, within ABID97_RS28100 at 537.127 kb on + strand, within ABID97_RS28100 at 537.127 kb on + strand, within ABID97_RS28100 at 537.128 kb on - strand, within ABID97_RS28100 at 537.485 kb on + strand at 537.486 kb on - strand at 537.564 kb on + strand at 537.564 kb on + strand at 537.565 kb on - strand at 537.843 kb on + strand, within ABID97_RS28105 at 537.979 kb on - strand, within ABID97_RS28105 at 538.069 kb on - strand, within ABID97_RS28105 at 538.240 kb on - strand, within ABID97_RS28105 at 538.491 kb on + strand, within ABID97_RS28105 at 538.492 kb on - strand, within ABID97_RS28105 at 538.492 kb on - strand, within ABID97_RS28105 at 538.645 kb on - strand, within ABID97_RS28105 at 538.722 kb on + strand, within ABID97_RS28105 at 538.722 kb on + strand, within ABID97_RS28105 at 538.722 kb on + strand, within ABID97_RS28105 at 538.723 kb on - strand, within ABID97_RS28105 at 538.723 kb on - strand, within ABID97_RS28105 at 538.723 kb on - strand, within ABID97_RS28105 at 538.723 kb on - strand, within ABID97_RS28105 at 538.774 kb on - strand, within ABID97_RS28105 at 538.887 kb on + strand, within ABID97_RS28105 at 538.888 kb on - strand, within ABID97_RS28105 at 539.509 kb on - strand at 539.509 kb on - strand at 539.599 kb on + strand at 539.621 kb on + strand at 539.621 kb on + strand at 539.622 kb on - strand at 539.704 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 536,646 + +0.3 536,697 + +0.7 536,698 - -0.4 537,127 + ABID97_RS28100 0.54 +0.3 537,127 + ABID97_RS28100 0.54 +0.5 537,127 + ABID97_RS28100 0.54 +0.0 537,128 - ABID97_RS28100 0.54 +0.0 537,485 + -0.5 537,486 - -0.2 537,564 + -0.1 537,564 + -0.3 537,565 - +1.1 537,843 + ABID97_RS28105 0.18 +0.0 537,979 - ABID97_RS28105 0.24 -0.5 538,069 - ABID97_RS28105 0.29 -1.5 538,240 - ABID97_RS28105 0.37 -0.1 538,491 + ABID97_RS28105 0.49 +0.1 538,492 - ABID97_RS28105 0.49 -1.1 538,492 - ABID97_RS28105 0.49 +0.2 538,645 - ABID97_RS28105 0.56 +0.3 538,722 + ABID97_RS28105 0.60 +0.2 538,722 + ABID97_RS28105 0.60 -0.2 538,722 + ABID97_RS28105 0.60 +0.4 538,723 - ABID97_RS28105 0.60 +0.2 538,723 - ABID97_RS28105 0.60 -0.1 538,723 - ABID97_RS28105 0.60 +1.0 538,723 - ABID97_RS28105 0.60 -0.4 538,774 - ABID97_RS28105 0.62 +0.6 538,887 + ABID97_RS28105 0.68 -0.3 538,888 - ABID97_RS28105 0.68 -0.3 539,509 - -0.4 539,509 - +0.2 539,599 + +0.7 539,621 + +0.4 539,621 + -0.5 539,622 - +0.0 539,704 + +0.2
Or see this region's nucleotide sequence