Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17085

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17080 and ABID97_RS17085 are separated by 1 nucleotidesABID97_RS17085 and ABID97_RS17090 are separated by 10 nucleotides ABID97_RS17080: ABID97_RS17080 - carbamoyl-phosphate synthase large subunit, at 3,528,255 to 3,531,503 _RS17080 ABID97_RS17085: ABID97_RS17085 - ORF6N domain-containing protein, at 3,531,505 to 3,532,044 _RS17085 ABID97_RS17090: ABID97_RS17090 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 3,532,055 to 3,533,239 _RS17090 Position (kb) 3531 3532 3533Strain fitness (log2 ratio) -1 0 1at 3531.511 kb on - strandat 3531.511 kb on - strandat 3531.543 kb on - strandat 3531.590 kb on - strand, within ABID97_RS17085at 3531.942 kb on - strand, within ABID97_RS17085at 3531.993 kb on - strandat 3531.993 kb on - strandat 3531.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,531,511 - +0.4
3,531,511 - +0.3
3,531,543 - +1.1
3,531,590 - ABID97_RS17085 0.16 -0.2
3,531,942 - ABID97_RS17085 0.81 -1.0
3,531,993 - +0.1
3,531,993 - -0.6
3,531,993 - -0.6

Or see this region's nucleotide sequence