Strain Fitness in Pseudomonas sp. RS175 around PFR28_05120

Experiment: D-Ribose carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Ribose carbon 10 mM
5,864,266	-		PFR28_05119	0.52	+0.5
5,864,442	+		PFR28_05119	0.61	-1.3
5,864,442	+		PFR28_05119	0.61	-0.7
5,864,442	+		PFR28_05119	0.61	-1.8
5,864,442	+		PFR28_05119	0.61	-0.6
5,864,442	+		PFR28_05119	0.61	+0.6
5,864,442	+		PFR28_05119	0.61	+0.4
5,864,442	+		PFR28_05119	0.61	+0.2
5,864,443	-		PFR28_05119	0.61	-0.6
5,864,443	-		PFR28_05119	0.61	+1.0
5,864,443	-		PFR28_05119	0.61	-1.1
5,864,478	+		PFR28_05119	0.63	+0.0
5,864,479	-		PFR28_05119	0.63	-1.1
5,864,484	+		PFR28_05119	0.63	+0.1
5,864,484	+		PFR28_05119	0.63	-0.8
5,864,484	+		PFR28_05119	0.63	+0.8
5,864,484	+		PFR28_05119	0.63	+0.5
5,864,484	+		PFR28_05119	0.63	+0.4
5,864,484	+		PFR28_05119	0.63	-0.7
5,864,484	+		PFR28_05119	0.63	+0.7
5,864,485	-		PFR28_05119	0.63	+1.5
5,864,485	-		PFR28_05119	0.63	+0.2
5,864,485	-		PFR28_05119	0.63	-0.5
5,864,485	-		PFR28_05119	0.63	-1.4
5,864,485	-		PFR28_05119	0.63	+2.7
5,864,485	-		PFR28_05119	0.63	-1.8
5,864,485	-		PFR28_05119	0.63	-0.6
5,864,617	-		PFR28_05119	0.70	+2.6
5,864,643	+		PFR28_05119	0.72	+0.2
5,864,643	+		PFR28_05119	0.72	-0.3
5,864,643	+		PFR28_05119	0.72	-0.2
5,864,643	+		PFR28_05119	0.72	+0.5
5,864,643	+		PFR28_05119	0.72	+0.8
5,864,643	+		PFR28_05119	0.72	-0.1
5,864,643	+		PFR28_05119	0.72	-1.1
5,864,643	+		PFR28_05119	0.72	-0.5
5,864,643	+		PFR28_05119	0.72	-0.1
5,864,643	+		PFR28_05119	0.72	-0.4
5,864,643	+		PFR28_05119	0.72	-0.5
5,864,643	+		PFR28_05119	0.72	+0.7
5,864,643	+		PFR28_05119	0.72	+0.0
5,864,643	+		PFR28_05119	0.72	-0.9
5,864,643	+		PFR28_05119	0.72	-3.2
5,864,643	+		PFR28_05119	0.72	+0.5
5,864,643	+		PFR28_05119	0.72	-0.5
5,864,643	+		PFR28_05119	0.72	-1.1
5,864,643	+		PFR28_05119	0.72	+0.0
5,864,643	+		PFR28_05119	0.72	+0.5
5,864,644	-		PFR28_05119	0.72	-1.6
5,864,644	-		PFR28_05119	0.72	+0.5
5,864,644	-		PFR28_05119	0.72	-0.4
5,864,644	-		PFR28_05119	0.72	-1.2
5,864,644	-		PFR28_05119	0.72	-0.5
5,864,644	-		PFR28_05119	0.72	+0.4
5,864,644	-		PFR28_05119	0.72	-0.1
5,864,644	-		PFR28_05119	0.72	+1.5
5,864,644	-		PFR28_05119	0.72	-0.1
5,864,644	-		PFR28_05119	0.72	-1.0
5,864,644	-		PFR28_05119	0.72	-0.4
5,864,644	-		PFR28_05119	0.72	-0.4
5,864,644	-		PFR28_05119	0.72	+0.9
5,864,644	-		PFR28_05119	0.72	-1.0
5,864,644	-		PFR28_05119	0.72	-1.3
5,864,644	-		PFR28_05119	0.72	-0.3
5,864,644	-		PFR28_05119	0.72	-0.1
5,864,644	-		PFR28_05119	0.72	-1.1
5,864,644	-		PFR28_05119	0.72	-0.5
5,864,644	-		PFR28_05119	0.72	+0.2
5,864,645	+		PFR28_05119	0.72	-1.8
5,864,645	+		PFR28_05119	0.72	-1.8
5,864,684	+		PFR28_05119	0.74	-0.0
5,864,685	-		PFR28_05119	0.74	-2.4
5,864,685	-		PFR28_05119	0.74	+0.5
5,864,685	-		PFR28_05119	0.74	+1.3
5,864,712	+		PFR28_05119	0.75	-0.6
5,864,712	+		PFR28_05119	0.75	+2.3
5,864,712	+		PFR28_05119	0.75	+1.2
5,864,712	+		PFR28_05119	0.75	+0.8
5,864,712	+		PFR28_05119	0.75	-0.1
5,864,712	+		PFR28_05119	0.75	+0.3
5,864,713	-		PFR28_05119	0.75	-0.6
5,864,713	-		PFR28_05119	0.75	-3.2
5,864,961	+		PFR28_05119	0.88	+0.2
5,864,962	-		PFR28_05119	0.88	-0.7
5,864,962	-		PFR28_05119	0.88	-0.7
5,865,309	-		PFR28_05120	0.13	+1.3
5,865,500	+		PFR28_05120	0.32	-2.1
5,865,500	+		PFR28_05120	0.32	-2.8
5,865,500	+		PFR28_05120	0.32	-2.8
5,865,500	+		PFR28_05120	0.32	-1.3
5,865,501	-		PFR28_05120	0.33	+1.9
5,865,501	-		PFR28_05120	0.33	-0.1
5,865,501	-		PFR28_05120	0.33	-1.0
5,865,503	+		PFR28_05120	0.33	-0.9
5,865,503	+		PFR28_05120	0.33	-0.4
5,865,503	+		PFR28_05120	0.33	-0.8
5,865,503	+		PFR28_05120	0.33	-1.3
5,865,504	-		PFR28_05120	0.33	-1.8
5,865,504	-		PFR28_05120	0.33	-1.4
5,865,504	-		PFR28_05120	0.33	-0.9
5,865,504	-		PFR28_05120	0.33	-1.4
5,865,504	-		PFR28_05120	0.33	-2.3
5,865,504	-		PFR28_05120	0.33	-1.1
5,865,504	-		PFR28_05120	0.33	-2.3
5,865,504	-		PFR28_05120	0.33	-1.3
5,865,504	-		PFR28_05120	0.33	-0.6
5,865,504	-		PFR28_05120	0.33	-0.1
5,865,504	-		PFR28_05120	0.33	-1.7
5,865,504	-		PFR28_05120	0.33	+1.5
5,865,504	-		PFR28_05120	0.33	-2.0
5,865,748	+		PFR28_05120	0.58	-0.6
5,865,785	+		PFR28_05120	0.62	-1.5
5,865,785	+		PFR28_05120	0.62	-2.2
5,865,785	+		PFR28_05120	0.62	-1.5
5,865,785	+		PFR28_05120	0.62	-2.9
5,865,786	-		PFR28_05120	0.62	-0.1
5,865,787	+		PFR28_05120	0.62	+1.0
5,865,787	+		PFR28_05120	0.62	+0.9
5,865,787	+		PFR28_05120	0.62	-1.5
5,865,787	+		PFR28_05120	0.62	-1.3
5,865,787	+		PFR28_05120	0.62	-1.5
5,865,788	-		PFR28_05120	0.62	-0.4
5,865,788	-		PFR28_05120	0.62	-1.5
5,865,788	-		PFR28_05120	0.62	-2.7
5,865,788	-		PFR28_05120	0.62	-1.6
5,865,788	-		PFR28_05120	0.62	-1.8
5,865,788	-		PFR28_05120	0.62	+1.6
5,865,788	-		PFR28_05120	0.62	-1.3
5,865,788	-		PFR28_05120	0.62	-0.7
5,865,882	+		PFR28_05120	0.72	-2.7
5,865,883	-		PFR28_05120	0.72	-0.3
5,865,894	+		PFR28_05120	0.73	-1.6
5,865,938	-		PFR28_05120	0.77	-2.1
5,865,938	-		PFR28_05120	0.77	+0.5
5,865,939	+		PFR28_05120	0.78	-1.9
5,865,939	+		PFR28_05120	0.78	-1.1
5,865,939	+		PFR28_05120	0.78	+1.3
5,865,939	+		PFR28_05120	0.78	-2.3
5,865,939	+		PFR28_05120	0.78	+0.8
5,865,939	+		PFR28_05120	0.78	-1.1
5,865,939	+		PFR28_05120	0.78	-1.0
5,865,939	+		PFR28_05120	0.78	-1.1
5,865,939	+		PFR28_05120	0.78	-2.0
5,865,939	+		PFR28_05120	0.78	-0.7
5,865,939	+		PFR28_05120	0.78	-0.8
5,865,939	+		PFR28_05120	0.78	+1.3
5,865,939	+		PFR28_05120	0.78	+0.2
5,865,939	+		PFR28_05120	0.78	-0.9
5,865,940	-		PFR28_05120	0.78	-1.1
5,865,940	-		PFR28_05120	0.78	-0.8
5,865,940	-		PFR28_05120	0.78	-1.9
5,865,940	-		PFR28_05120	0.78	-0.1
5,865,940	-		PFR28_05120	0.78	-1.1
5,865,940	-		PFR28_05120	0.78	-1.5
5,865,940	-		PFR28_05120	0.78	+1.1
5,865,940	-		PFR28_05120	0.78	+1.0
5,865,940	-		PFR28_05120	0.78	+0.5
5,865,940	-		PFR28_05120	0.78	-0.1
5,865,971	+		PFR28_05120	0.81	-0.5
5,866,019	-		PFR28_05120	0.86	+0.9
5,866,127	+				-0.2
5,866,219	+				-0.0
5,866,219	+				+0.8
5,866,222	+				-0.4
5,866,509	+				+0.4
5,866,509	+				-0.7
5,866,510	-				+1.7
5,866,510	-				-0.3
5,866,510	-				-1.0
5,866,510	-				-3.0
5,866,556	+				-0.3
5,866,556	+				-1.8
5,866,556	+				-0.2
5,866,556	+				-0.2
5,866,556	+				-0.3
5,866,794	-		PFR28_05122	0.21	+1.1
5,866,794	-		PFR28_05122	0.21	+0.2
5,866,794	-		PFR28_05122	0.21	-1.5
5,866,794	-		PFR28_05122	0.21	+0.8
5,866,794	-		PFR28_05122	0.21	+1.3
5,866,850	+		PFR28_05122	0.25	+0.9
5,866,851	-		PFR28_05122	0.25	-0.3
5,866,851	-		PFR28_05122	0.25	-1.4
5,866,922	+		PFR28_05122	0.31	+0.3
5,866,922	+		PFR28_05122	0.31	-1.6
5,866,922	+		PFR28_05122	0.31	-2.1
5,866,923	-		PFR28_05122	0.31	+0.1
5,867,136	+		PFR28_05122	0.47	-1.1
5,867,137	-		PFR28_05122	0.47	+0.7
5,867,137	-		PFR28_05122	0.47	+0.5
5,867,138	+		PFR28_05122	0.47	+0.2
5,867,138	+		PFR28_05122	0.47	-0.2
5,867,138	+		PFR28_05122	0.47	+0.7
5,867,139	-		PFR28_05122	0.47	+0.8
5,867,139	-		PFR28_05122	0.47	+0.2