Strain Fitness in Pseudomonas sp. RS175 around PFR28_03902

Experiment: D-Ribose carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Ribose carbon 10 mM
4,482,325	+		PFR28_03901	0.50	-0.8
4,482,325	+		PFR28_03901	0.50	-1.0
4,482,325	+		PFR28_03901	0.50	+0.4
4,482,325	+		PFR28_03901	0.50	+0.9
4,482,325	+		PFR28_03901	0.50	-1.3
4,482,325	+		PFR28_03901	0.50	+1.6
4,482,325	+		PFR28_03901	0.50	+1.5
4,482,325	+		PFR28_03901	0.50	+0.6
4,482,325	+		PFR28_03901	0.50	-1.6
4,482,326	-		PFR28_03901	0.50	-0.2
4,482,326	-		PFR28_03901	0.50	+0.0
4,482,326	-		PFR28_03901	0.50	+0.3
4,482,326	-		PFR28_03901	0.50	+1.4
4,482,326	-		PFR28_03901	0.50	+1.5
4,482,326	-		PFR28_03901	0.50	-0.1
4,482,403	+		PFR28_03901	0.57	-1.3
4,482,403	+		PFR28_03901	0.57	-0.1
4,482,404	-		PFR28_03901	0.57	+1.4
4,482,404	-		PFR28_03901	0.57	-0.5
4,482,404	-		PFR28_03901	0.57	+0.8
4,482,404	-		PFR28_03901	0.57	-1.0
4,482,404	-		PFR28_03901	0.57	+0.6
4,482,529	+		PFR28_03901	0.67	-1.3
4,482,530	-		PFR28_03901	0.67	-0.7
4,482,530	-		PFR28_03901	0.67	+0.3
4,482,530	-		PFR28_03901	0.67	-0.6
4,482,530	-		PFR28_03901	0.67	-0.4
4,482,532	+		PFR28_03901	0.67	+1.4
4,482,532	+		PFR28_03901	0.67	-0.5
4,482,532	+		PFR28_03901	0.67	-0.2
4,482,532	+		PFR28_03901	0.67	-0.1
4,482,532	+		PFR28_03901	0.67	-0.4
4,482,532	+		PFR28_03901	0.67	+0.5
4,482,533	-		PFR28_03901	0.68	-0.3
4,482,533	-		PFR28_03901	0.68	-0.2
4,482,664	+		PFR28_03901	0.78	+0.1
4,482,664	+		PFR28_03901	0.78	-1.5
4,482,664	+		PFR28_03901	0.78	+0.9
4,482,664	+		PFR28_03901	0.78	-1.8
4,482,665	-		PFR28_03901	0.79	-2.1
4,482,665	-		PFR28_03901	0.79	-0.5
4,482,712	+		PFR28_03901	0.82	+0.8
4,482,712	+		PFR28_03901	0.82	-0.5
4,482,712	+		PFR28_03901	0.82	-0.2
4,482,712	+		PFR28_03901	0.82	-0.6
4,482,712	+		PFR28_03901	0.82	+1.1
4,482,713	-		PFR28_03901	0.83	-0.5
4,482,713	-		PFR28_03901	0.83	+0.4
4,482,713	-		PFR28_03901	0.83	+1.6
4,482,713	-		PFR28_03901	0.83	-0.3
4,482,713	-		PFR28_03901	0.83	+0.2
4,482,716	+		PFR28_03901	0.83	+0.3
4,482,716	+		PFR28_03901	0.83	-0.0
4,482,716	+		PFR28_03901	0.83	-1.2
4,482,716	+		PFR28_03901	0.83	+0.1
4,482,716	+		PFR28_03901	0.83	-0.0
4,482,717	-		PFR28_03901	0.83	-0.2
4,482,717	-		PFR28_03901	0.83	+0.8
4,482,717	-		PFR28_03901	0.83	-0.5
4,482,734	-		PFR28_03901	0.84	-2.7
4,482,842	+				-0.8
4,482,965	-				-0.3
4,482,965	-				-1.4
4,482,993	+				-1.7
4,482,994	-				+0.3
4,482,994	-				+0.4
4,482,994	-				+0.6
4,482,998	+				+0.3
4,482,998	+				-0.8
4,482,998	+				-0.2
4,482,998	+				+0.5
4,482,998	+				-1.5
4,482,998	+				-0.8
4,482,998	+				-0.6
4,482,998	+				+0.4
4,482,998	+				-0.1
4,482,998	+				+1.1
4,482,998	+				+0.1
4,482,998	+				-0.1
4,482,998	+				+0.7
4,482,998	+				+0.8
4,482,998	+				-0.5
4,482,998	+				-0.8
4,482,998	+				-0.1
4,482,998	+				+1.1
4,482,998	+				+0.6
4,482,998	+				-1.2
4,482,998	+				+0.4
4,482,998	+				-1.2
4,482,998	+				-0.4
4,482,998	+				-0.1
4,482,998	+				-0.4
4,482,998	+				-0.9
4,482,999	-				+0.2
4,482,999	-				-0.5
4,482,999	-				+2.3
4,482,999	-				+0.1
4,482,999	-				-1.5
4,482,999	-				-0.1
4,482,999	-				-0.0
4,482,999	-				+0.1
4,482,999	-				+0.6
4,482,999	-				+0.3
4,482,999	-				-2.0
4,482,999	-				-0.1
4,482,999	-				+0.8
4,482,999	-				-0.4
4,483,001	+				-0.7
4,483,001	+				-0.3
4,483,031	-				-0.4
4,483,074	+				+0.2
4,483,074	+				+0.4
4,483,074	+				+0.9
4,483,074	+				-0.6
4,483,074	+				+0.0
4,483,074	+				-0.3
4,483,075	-				-0.5
4,483,075	-				-1.4
4,483,075	-				-0.4
4,483,075	-				-0.1
4,483,075	-				+0.0
4,483,075	-				+0.0
4,483,077	-				+0.5
4,483,146	+				-1.2
4,483,312	+				+0.2
4,483,312	+				+1.0
4,483,312	+				-0.0
4,483,312	+				+0.8
4,483,313	-				-0.5
4,483,313	-				-0.5
4,483,313	-				-1.6
4,483,561	+		PFR28_03902	0.69	-1.3
4,483,658	+				+1.3
4,483,659	-				-0.7
4,483,676	+				-0.2
4,483,676	+				+0.1
4,483,676	+				-1.0
4,483,676	+				+0.7
4,483,676	+				-0.3
4,483,676	+				-0.6
4,483,676	+				+0.3
4,483,676	+				+0.9
4,483,676	+				+0.9
4,483,676	+				-0.4
4,483,676	+				+0.0
4,483,677	-				-2.0
4,483,677	-				-0.9
4,483,677	-				-0.2
4,483,677	-				-2.1
4,483,677	-				+0.6
4,483,697	+				+0.1
4,483,697	+				-0.2
4,483,697	+				-0.4
4,483,697	+				+0.9
4,483,697	+				+0.3
4,483,697	+				-0.7
4,483,697	+				-0.5
4,483,698	-				-0.2
4,483,735	+				+0.9
4,483,736	-				-0.6
4,483,744	+				-0.9
4,483,852	+				+0.2
4,483,852	+				-0.1
4,483,852	+				-0.2
4,483,852	+				+0.5
4,483,852	+				-0.8
4,483,853	-				-0.3
4,483,853	-				+0.9
4,483,853	-				+1.0
4,483,853	-				-2.0
4,483,853	-				-0.5
4,483,949	+				+0.2
4,483,949	+				-0.7
4,483,949	+				+0.5
4,483,949	+				+0.3
4,483,949	+				-0.1
4,483,949	+				+1.0
4,483,949	+				-0.1
4,483,950	-				-0.6
4,483,950	-				-0.1
4,483,950	-				+0.5
4,483,950	-				+1.5
4,483,950	-				-0.2
4,483,950	-				+0.6
4,483,955	+				+0.7
4,483,955	+				+0.3
4,484,052	+				+0.3
4,484,125	+				-0.8
4,484,126	-				-1.1
4,484,126	-				+1.4
4,484,242	+		PFR28_03903	0.46	+0.5
4,484,243	-		PFR28_03903	0.46	+0.7
4,484,243	-		PFR28_03903	0.46	+1.2
4,484,243	-		PFR28_03903	0.46	+0.2
4,484,243	-		PFR28_03903	0.46	-0.3
4,484,244	+		PFR28_03903	0.47	-0.0
4,484,244	+		PFR28_03903	0.47	+0.4
4,484,244	+		PFR28_03903	0.47	-0.6
4,484,244	+		PFR28_03903	0.47	+0.1
4,484,244	+		PFR28_03903	0.47	+0.4
4,484,244	+		PFR28_03903	0.47	-0.9
4,484,244	+		PFR28_03903	0.47	-0.1
4,484,244	+		PFR28_03903	0.47	+0.2
4,484,244	+		PFR28_03903	0.47	-0.5
4,484,245	-		PFR28_03903	0.47	-0.6
4,484,245	-		PFR28_03903	0.47	+0.2
4,484,245	-		PFR28_03903	0.47	+0.3
4,484,245	-		PFR28_03903	0.47	+0.7
4,484,245	-		PFR28_03903	0.47	-0.3
4,484,430	+				-0.3
4,484,430	+				-0.4
4,484,431	-				-1.1
4,484,443	+				-0.5
4,484,443	+				-1.0
4,484,443	+				+0.1
4,484,443	+				-0.5
4,484,443	+				+0.2
4,484,444	-				+0.9
4,484,449	+				-1.4
4,484,449	+				-0.6
4,484,450	-				+0.9
4,484,451	+				-2.1
4,484,452	-				+1.1
4,484,464	+				-1.9
4,484,464	+				+1.0
4,484,514	-				-0.8
4,484,592	+				-1.3
4,484,639	+				+0.4
4,484,639	+				-2.3
4,484,639	+				+0.9
4,484,640	-				-0.9