Strain Fitness in Pseudomonas sp. RS175 around PFR28_01719

Experiment: D-Ribose carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Ribose carbon 10 mM
1,910,314	+				+0.7
1,910,314	+				+0.6
1,910,314	+				+0.7
1,910,401	-				-0.3
1,910,613	+		PFR28_01718	0.26	-0.1
1,910,614	-		PFR28_01718	0.26	-0.2
1,910,787	+		PFR28_01718	0.73	-0.3
1,910,787	+		PFR28_01718	0.73	-2.4
1,910,894	+				-0.7
1,910,894	+				+0.9
1,910,894	+				+1.2
1,910,894	+				+0.1
1,910,895	-				+1.2
1,910,908	-				+0.3
1,910,908	-				-0.6
1,910,932	+				+0.4
1,910,932	+				-0.5
1,910,932	+				-0.8
1,910,932	+				+0.6
1,910,933	-				-1.1
1,910,933	-				-0.2
1,910,942	+				+1.2
1,910,943	-				+1.3
1,910,943	-				-1.9
1,910,943	-				-1.1
1,910,943	-				-0.4
1,910,975	+				-0.5
1,910,975	+				+0.7
1,910,976	-				+0.1
1,910,976	-				+1.2
1,910,976	-				+0.2
1,910,976	-				-1.1
1,910,976	-				+1.7
1,910,989	+				+1.0
1,910,989	+				-0.8
1,910,989	+				+0.4
1,910,989	+				-2.4
1,910,989	+				-1.5
1,910,989	+				-2.0
1,910,989	+				-1.0
1,910,989	+				-0.2
1,910,989	+				-0.8
1,910,989	+				+0.4
1,910,989	+				-0.1
1,910,989	+				-0.5
1,910,989	+				+0.7
1,910,989	+				+0.8
1,910,989	+				-0.2
1,910,989	+				+0.2
1,910,989	+				-0.1
1,910,989	+				+0.2
1,910,989	+				+0.3
1,910,989	+				-0.1
1,910,990	-				+0.1
1,910,990	-				+0.2
1,910,990	-				+0.4
1,910,990	-				-0.0
1,910,990	-				-0.1
1,910,990	-				+0.6
1,910,990	-				-1.9
1,910,990	-				-0.6
1,910,990	-				-0.1
1,910,990	-				-1.3
1,910,990	-				+0.7
1,910,990	-				+0.8
1,910,990	-				-0.8
1,910,990	-				-1.6
1,910,990	-				+0.1
1,910,990	-				+0.1
1,910,990	-				-0.4
1,910,990	-				-0.0
1,910,990	-				+0.2
1,910,991	+				-1.8
1,910,991	+				+1.1
1,910,991	+				-1.6
1,910,991	+				+0.6
1,910,991	+				-2.9
1,910,992	-				-3.1
1,910,992	-				+0.4
1,910,992	-				+0.1
1,910,992	-				-0.1
1,910,992	-				-0.8
1,910,994	+				+0.2
1,910,994	+				-2.2
1,910,994	+				+0.6
1,910,994	+				+1.0
1,910,994	+				+0.4
1,910,995	-				-0.1
1,910,995	-				-0.3
1,910,995	-				-0.2
1,910,995	-				-1.4
1,911,196	+				-0.4
1,911,257	+				-1.2
1,911,258	-				+0.3
1,911,258	-				-3.0
1,911,258	-				+0.1
1,911,258	-				-2.7
1,911,307	+				-3.2
1,911,308	-				+1.1
1,911,308	-				-0.5
1,911,308	-				-0.7
1,911,398	+				-1.0
1,911,398	+				-0.7
1,911,399	-				+0.2
1,911,521	+		PFR28_01719	0.11	+1.2
1,911,522	-		PFR28_01719	0.11	+0.4
1,911,522	-		PFR28_01719	0.11	+0.4
1,911,522	-		PFR28_01719	0.11	-0.5
1,911,522	-		PFR28_01719	0.11	-0.4
1,911,711	-		PFR28_01719	0.16	-2.0
1,911,711	-		PFR28_01719	0.16	-0.2
1,911,711	-		PFR28_01719	0.16	+0.4
1,911,711	-		PFR28_01719	0.16	-0.1
1,911,749	+		PFR28_01719	0.17	-0.1
1,911,750	-		PFR28_01719	0.17	-0.8
1,911,750	-		PFR28_01719	0.17	+0.7
1,911,788	+		PFR28_01719	0.19	-0.7
1,911,942	-		PFR28_01719	0.23	-0.8
1,911,968	+		PFR28_01719	0.24	-1.5
1,911,968	+		PFR28_01719	0.24	+0.2
1,911,968	+		PFR28_01719	0.24	-3.3
1,911,968	+		PFR28_01719	0.24	-1.4
1,911,968	+		PFR28_01719	0.24	-2.1
1,911,969	-		PFR28_01719	0.24	-0.8
1,911,969	-		PFR28_01719	0.24	-2.2
1,911,969	-		PFR28_01719	0.24	-1.1
1,911,969	-		PFR28_01719	0.24	-1.3
1,911,969	-		PFR28_01719	0.24	-1.2
1,912,011	-		PFR28_01719	0.25	+0.2
1,912,011	-		PFR28_01719	0.25	-2.7
1,912,011	-		PFR28_01719	0.25	-0.8
1,912,011	-		PFR28_01719	0.25	-2.7
1,912,127	+		PFR28_01719	0.28	-2.2
1,912,127	+		PFR28_01719	0.28	-2.9
1,912,128	-		PFR28_01719	0.28	-0.5
1,912,291	+		PFR28_01719	0.33	-0.9
1,912,291	+		PFR28_01719	0.33	-0.3
1,912,299	+		PFR28_01719	0.33	+1.2
1,912,299	+		PFR28_01719	0.33	-1.5
1,912,299	+		PFR28_01719	0.33	+2.1
1,912,299	+		PFR28_01719	0.33	-1.8
1,912,299	+		PFR28_01719	0.33	-1.7
1,912,300	-		PFR28_01719	0.33	-0.8
1,912,300	-		PFR28_01719	0.33	-0.7
1,912,300	-		PFR28_01719	0.33	-1.1
1,912,300	-		PFR28_01719	0.33	-2.0
1,912,300	-		PFR28_01719	0.33	-1.2
1,912,300	-		PFR28_01719	0.33	-0.1
1,912,300	-		PFR28_01719	0.33	-0.5
1,912,595	+		PFR28_01719	0.42	-1.3
1,912,595	+		PFR28_01719	0.42	+0.2
1,912,595	+		PFR28_01719	0.42	-1.7
1,912,595	+		PFR28_01719	0.42	-0.4
1,912,595	+		PFR28_01719	0.42	-1.0
1,912,596	-		PFR28_01719	0.42	-0.8
1,912,596	-		PFR28_01719	0.42	-0.4
1,912,596	-		PFR28_01719	0.42	-0.6
1,912,733	+		PFR28_01719	0.46	-2.1
1,912,733	+		PFR28_01719	0.46	-3.1
1,912,734	-		PFR28_01719	0.46	+0.9
1,912,734	-		PFR28_01719	0.46	-0.9
1,912,734	-		PFR28_01719	0.46	+0.2
1,912,734	-		PFR28_01719	0.46	-1.1
1,912,937	+		PFR28_01719	0.52	+0.6
1,912,937	+		PFR28_01719	0.52	+1.2
1,912,937	+		PFR28_01719	0.52	-1.6
1,912,938	-		PFR28_01719	0.52	+0.8
1,912,938	-		PFR28_01719	0.52	-1.8
1,912,938	-		PFR28_01719	0.52	+0.2
1,912,938	-		PFR28_01719	0.52	-3.2
1,913,107	+		PFR28_01719	0.56	-0.6
1,913,108	-		PFR28_01719	0.56	-0.7
1,913,276	+		PFR28_01719	0.61	+0.1
1,913,277	-		PFR28_01719	0.61	-0.1
1,913,277	-		PFR28_01719	0.61	-0.5
1,913,901	+		PFR28_01719	0.79	+0.1
1,913,901	+		PFR28_01719	0.79	+0.9
1,914,051	-		PFR28_01719	0.83	+0.2
1,914,241	-		PFR28_01719	0.89	-2.0
1,914,286	+				-1.0
1,914,287	-				-1.0
1,914,287	-				-1.4
1,914,551	+				-0.8
1,914,613	+				-0.7
1,914,626	+				-0.6
1,914,676	+				+0.2
1,914,676	+				-0.0
1,914,676	+				+0.9
1,914,677	-				-1.7
1,914,677	-				+0.6
1,914,677	-				+0.0
1,914,685	+				-0.9
1,914,685	+				+0.6
1,914,685	+				+0.1
1,914,685	+				+0.0
1,914,685	+				+0.1
1,914,685	+				+1.6
1,914,685	+				+0.8
1,914,686	-				+0.2
1,914,686	-				+0.2
1,914,686	-				-0.9
1,914,686	-				-0.2
1,914,691	+				-0.3
1,914,691	+				+0.2
1,914,692	-				+0.8
1,914,692	-				+0.8
1,914,692	-				+0.4
1,914,706	+				+0.5
1,914,706	+				-0.7
1,914,916	+		PFR28_01720	0.35	-0.2
1,914,917	-		PFR28_01720	0.35	+0.2
1,914,917	-		PFR28_01720	0.35	-0.2
1,914,917	-		PFR28_01720	0.35	+0.5
1,914,917	-		PFR28_01720	0.35	-0.8
1,914,917	-		PFR28_01720	0.35	+0.5
1,914,917	-		PFR28_01720	0.35	-0.2
1,914,917	-		PFR28_01720	0.35	+1.4
1,914,917	-		PFR28_01720	0.35	+0.3
1,914,968	-		PFR28_01720	0.42	-0.7
1,915,011	+		PFR28_01720	0.47	-2.2
1,915,012	-		PFR28_01720	0.47	+0.0
1,915,022	-		PFR28_01720	0.48	+0.3
1,915,022	-		PFR28_01720	0.48	+1.0
1,915,022	-		PFR28_01720	0.48	+0.4
1,915,022	-		PFR28_01720	0.48	+0.9
1,915,022	-		PFR28_01720	0.48	+0.9
1,915,097	-		PFR28_01720	0.57	-0.2
1,915,097	-		PFR28_01720	0.57	-0.7
1,915,097	-		PFR28_01720	0.57	+0.2
1,915,145	-		PFR28_01720	0.63	+0.7
1,915,147	+		PFR28_01720	0.64	-1.1
1,915,148	-		PFR28_01720	0.64	-1.6
1,915,148	-		PFR28_01720	0.64	+0.3
1,915,148	-		PFR28_01720	0.64	+0.1
1,915,148	-		PFR28_01720	0.64	-0.9
1,915,148	-		PFR28_01720	0.64	-0.7
1,915,148	-		PFR28_01720	0.64	-0.3
1,915,160	-		PFR28_01720	0.65	+1.8
1,915,160	-		PFR28_01720	0.65	+0.0
1,915,160	-		PFR28_01720	0.65	-1.5
1,915,166	-		PFR28_01720	0.66	-0.5
1,915,166	-		PFR28_01720	0.66	+0.3
1,915,430	-				+0.2
1,915,430	-				+1.2
1,915,430	-				-1.6
1,915,439	+				+1.4
1,915,439	+				+0.5
1,915,439	+				+0.2
1,915,439	+				-0.3
1,915,440	-				-0.3
1,915,558	+		PFR28_01721	0.20	-0.7
1,915,558	+		PFR28_01721	0.20	-2.3
1,915,558	+		PFR28_01721	0.20	-0.2
1,915,559	-		PFR28_01721	0.20	-0.4
1,915,573	+		PFR28_01721	0.23	-0.6