Experiment: D-Ribose carbon 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00835 and PFR28_00836 are separated by 6 nucleotides PFR28_00836 and PFR28_00837 are separated by 103 nucleotides PFR28_00837 and PFR28_00838 are separated by 9 nucleotides
PFR28_00835: PFR28_00835 - Flagellum-specific ATP synthase, at 908,860 to 910,218
_00835
PFR28_00836: PFR28_00836 - Flagellar FliJ protein, at 910,225 to 910,674
_00836
PFR28_00837: PFR28_00837 - hypothetical protein, at 910,778 to 911,170
_00837
PFR28_00838: PFR28_00838 - Sensor histidine kinase RcsC, at 911,180 to 912,886
_00838
Position (kb) 910
911
912 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 909.805 kb on - strand, within PFR28_00835 at 909.805 kb on - strand, within PFR28_00835 at 909.814 kb on + strand, within PFR28_00835 at 909.814 kb on + strand, within PFR28_00835 at 909.814 kb on + strand, within PFR28_00835 at 909.814 kb on + strand, within PFR28_00835 at 909.814 kb on + strand, within PFR28_00835 at 909.814 kb on + strand, within PFR28_00835 at 909.814 kb on + strand, within PFR28_00835 at 909.814 kb on + strand, within PFR28_00835 at 909.815 kb on - strand, within PFR28_00835 at 909.815 kb on - strand, within PFR28_00835 at 909.815 kb on - strand, within PFR28_00835 at 909.815 kb on - strand, within PFR28_00835 at 909.815 kb on - strand, within PFR28_00835 at 909.815 kb on - strand, within PFR28_00835 at 909.815 kb on - strand, within PFR28_00835 at 909.817 kb on - strand, within PFR28_00835 at 910.018 kb on + strand, within PFR28_00835 at 910.018 kb on + strand, within PFR28_00835 at 910.018 kb on + strand, within PFR28_00835 at 910.018 kb on + strand, within PFR28_00835 at 910.019 kb on - strand, within PFR28_00835 at 910.066 kb on + strand, within PFR28_00835 at 910.066 kb on + strand, within PFR28_00835 at 910.066 kb on + strand, within PFR28_00835 at 910.066 kb on + strand, within PFR28_00835 at 910.066 kb on + strand, within PFR28_00835 at 910.067 kb on - strand, within PFR28_00835 at 910.067 kb on - strand, within PFR28_00835 at 910.067 kb on - strand, within PFR28_00835 at 910.067 kb on - strand, within PFR28_00835 at 910.067 kb on - strand, within PFR28_00835 at 910.067 kb on - strand, within PFR28_00835 at 910.067 kb on - strand, within PFR28_00835 at 910.067 kb on - strand, within PFR28_00835 at 910.071 kb on - strand, within PFR28_00835 at 910.071 kb on - strand, within PFR28_00835 at 910.111 kb on + strand at 910.129 kb on + strand at 910.129 kb on + strand at 910.129 kb on + strand at 910.130 kb on - strand at 910.130 kb on - strand at 910.309 kb on + strand, within PFR28_00836 at 910.310 kb on - strand, within PFR28_00836 at 910.310 kb on - strand, within PFR28_00836 at 910.376 kb on - strand, within PFR28_00836 at 910.436 kb on - strand, within PFR28_00836 at 910.582 kb on + strand, within PFR28_00836 at 910.582 kb on + strand, within PFR28_00836 at 910.583 kb on - strand, within PFR28_00836 at 910.583 kb on - strand, within PFR28_00836 at 910.583 kb on - strand, within PFR28_00836 at 910.583 kb on - strand, within PFR28_00836 at 910.583 kb on - strand, within PFR28_00836 at 910.583 kb on - strand, within PFR28_00836 at 910.738 kb on + strand at 910.738 kb on + strand at 910.738 kb on + strand at 910.739 kb on - strand at 910.739 kb on - strand at 910.739 kb on - strand at 910.747 kb on + strand at 910.747 kb on + strand at 910.747 kb on + strand at 910.747 kb on + strand at 910.747 kb on + strand at 910.747 kb on + strand at 910.747 kb on + strand at 910.747 kb on + strand at 910.747 kb on + strand at 910.748 kb on - strand at 910.748 kb on - strand at 910.748 kb on - strand at 910.748 kb on - strand at 910.748 kb on - strand at 910.748 kb on - strand at 910.748 kb on - strand at 910.748 kb on - strand at 910.748 kb on - strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.753 kb on + strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.754 kb on - strand at 910.774 kb on + strand at 910.774 kb on + strand at 910.774 kb on + strand at 910.774 kb on + strand at 910.774 kb on + strand at 910.774 kb on + strand at 910.775 kb on - strand at 910.775 kb on - strand at 910.775 kb on - strand at 910.775 kb on - strand at 910.775 kb on - strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.777 kb on + strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.778 kb on - strand at 910.797 kb on + strand at 910.798 kb on - strand at 910.798 kb on - strand at 910.907 kb on + strand, within PFR28_00837 at 910.907 kb on + strand, within PFR28_00837 at 910.908 kb on - strand, within PFR28_00837 at 910.934 kb on + strand, within PFR28_00837 at 910.934 kb on + strand, within PFR28_00837 at 910.934 kb on + strand, within PFR28_00837 at 910.934 kb on + strand, within PFR28_00837 at 910.934 kb on + strand, within PFR28_00837 at 910.934 kb on + strand, within PFR28_00837 at 910.935 kb on - strand, within PFR28_00837 at 910.935 kb on - strand, within PFR28_00837 at 910.935 kb on - strand, within PFR28_00837 at 910.935 kb on - strand, within PFR28_00837 at 910.935 kb on - strand, within PFR28_00837 at 911.318 kb on + strand at 911.318 kb on + strand at 911.318 kb on + strand at 911.319 kb on - strand at 911.513 kb on + strand, within PFR28_00838 at 911.513 kb on + strand, within PFR28_00838 at 911.513 kb on + strand, within PFR28_00838 at 911.514 kb on - strand, within PFR28_00838 at 911.515 kb on + strand, within PFR28_00838 at 911.516 kb on - strand, within PFR28_00838 at 911.516 kb on - strand, within PFR28_00838 at 911.618 kb on + strand, within PFR28_00838 at 911.618 kb on + strand, within PFR28_00838 at 911.618 kb on + strand, within PFR28_00838 at 911.618 kb on + strand, within PFR28_00838 at 911.618 kb on + strand, within PFR28_00838 at 911.619 kb on - strand, within PFR28_00838 at 911.619 kb on - strand, within PFR28_00838 at 911.619 kb on - strand, within PFR28_00838 at 911.619 kb on - strand, within PFR28_00838 at 911.702 kb on + strand, within PFR28_00838 at 911.703 kb on - strand, within PFR28_00838 at 911.717 kb on + strand, within PFR28_00838 at 911.717 kb on + strand, within PFR28_00838 at 911.717 kb on + strand, within PFR28_00838 at 911.717 kb on + strand, within PFR28_00838 at 911.717 kb on + strand, within PFR28_00838 at 911.718 kb on - strand, within PFR28_00838 at 911.718 kb on - strand, within PFR28_00838 at 911.718 kb on - strand, within PFR28_00838 at 911.718 kb on - strand, within PFR28_00838 at 911.849 kb on + strand, within PFR28_00838 at 911.849 kb on + strand, within PFR28_00838 at 911.850 kb on - strand, within PFR28_00838 at 912.093 kb on + strand, within PFR28_00838 at 912.094 kb on - strand, within PFR28_00838 at 912.094 kb on - strand, within PFR28_00838 at 912.141 kb on + strand, within PFR28_00838
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose carbon 10 mM remove 909,805 - PFR28_00835 0.70 -0.8 909,805 - PFR28_00835 0.70 +1.0 909,814 + PFR28_00835 0.70 -0.1 909,814 + PFR28_00835 0.70 +0.6 909,814 + PFR28_00835 0.70 +0.3 909,814 + PFR28_00835 0.70 +1.0 909,814 + PFR28_00835 0.70 +0.2 909,814 + PFR28_00835 0.70 +1.8 909,814 + PFR28_00835 0.70 +1.5 909,814 + PFR28_00835 0.70 +0.1 909,815 - PFR28_00835 0.70 +0.9 909,815 - PFR28_00835 0.70 +1.5 909,815 - PFR28_00835 0.70 +1.0 909,815 - PFR28_00835 0.70 +0.9 909,815 - PFR28_00835 0.70 +0.3 909,815 - PFR28_00835 0.70 +0.7 909,815 - PFR28_00835 0.70 +1.3 909,817 - PFR28_00835 0.70 +0.5 910,018 + PFR28_00835 0.85 -1.7 910,018 + PFR28_00835 0.85 +0.8 910,018 + PFR28_00835 0.85 -0.1 910,018 + PFR28_00835 0.85 +0.2 910,019 - PFR28_00835 0.85 -0.2 910,066 + PFR28_00835 0.89 +0.8 910,066 + PFR28_00835 0.89 -0.2 910,066 + PFR28_00835 0.89 +0.9 910,066 + PFR28_00835 0.89 -0.1 910,066 + PFR28_00835 0.89 +0.0 910,067 - PFR28_00835 0.89 +0.7 910,067 - PFR28_00835 0.89 +0.6 910,067 - PFR28_00835 0.89 -0.3 910,067 - PFR28_00835 0.89 +0.8 910,067 - PFR28_00835 0.89 +0.2 910,067 - PFR28_00835 0.89 -1.0 910,067 - PFR28_00835 0.89 +0.5 910,067 - PFR28_00835 0.89 +1.0 910,071 - PFR28_00835 0.89 +0.5 910,071 - PFR28_00835 0.89 +1.2 910,111 + +1.3 910,129 + +1.6 910,129 + +0.7 910,129 + +0.8 910,130 - +0.7 910,130 - +0.6 910,309 + PFR28_00836 0.19 +0.8 910,310 - PFR28_00836 0.19 +0.1 910,310 - PFR28_00836 0.19 +1.6 910,376 - PFR28_00836 0.34 +0.3 910,436 - PFR28_00836 0.47 +0.3 910,582 + PFR28_00836 0.79 +0.3 910,582 + PFR28_00836 0.79 +1.1 910,583 - PFR28_00836 0.80 -0.0 910,583 - PFR28_00836 0.80 +1.1 910,583 - PFR28_00836 0.80 +0.2 910,583 - PFR28_00836 0.80 +0.5 910,583 - PFR28_00836 0.80 +0.5 910,583 - PFR28_00836 0.80 +0.3 910,738 + -1.0 910,738 + -0.3 910,738 + -1.9 910,739 - -0.0 910,739 - -1.5 910,739 - -0.4 910,747 + -0.5 910,747 + -4.0 910,747 + -0.6 910,747 + -2.0 910,747 + +0.2 910,747 + -0.0 910,747 + -1.0 910,747 + -0.3 910,747 + -0.5 910,748 - -1.9 910,748 - -3.1 910,748 - -0.6 910,748 - -1.1 910,748 - +0.1 910,748 - -0.8 910,748 - -1.2 910,748 - -1.8 910,748 - -1.1 910,753 + -0.8 910,753 + +1.8 910,753 + -1.6 910,753 + +1.2 910,753 + -1.7 910,753 + -1.7 910,753 + -0.3 910,753 + -0.2 910,753 + -0.3 910,753 + +0.0 910,753 + -1.1 910,753 + -2.3 910,753 + -1.1 910,753 + -0.1 910,753 + -1.9 910,753 + +1.7 910,753 + -1.2 910,753 + -0.2 910,753 + +0.9 910,753 + -0.3 910,753 + -1.5 910,753 + -0.1 910,754 - +0.1 910,754 - +0.7 910,754 - -1.7 910,754 - +0.2 910,754 - -1.7 910,754 - -1.1 910,754 - -2.5 910,754 - -4.0 910,754 - -1.3 910,754 - -1.7 910,754 - -0.7 910,754 - -3.6 910,754 - -2.3 910,754 - -0.7 910,754 - -1.1 910,754 - -2.4 910,754 - +0.6 910,754 - -1.1 910,754 - -0.9 910,754 - +0.3 910,774 + -0.7 910,774 + +0.3 910,774 + -0.9 910,774 + -2.8 910,774 + -1.1 910,774 + -0.9 910,775 - -2.5 910,775 - -1.1 910,775 - +0.0 910,775 - -2.0 910,775 - -0.5 910,777 + -0.6 910,777 + -1.8 910,777 + -0.2 910,777 + -2.0 910,777 + -1.5 910,777 + -0.3 910,777 + -1.2 910,777 + +0.4 910,777 + -1.3 910,777 + -0.1 910,777 + +0.3 910,777 + -1.3 910,777 + -0.2 910,777 + -1.9 910,777 + -1.0 910,777 + -0.0 910,777 + -2.3 910,777 + -0.5 910,777 + -3.9 910,777 + -1.0 910,777 + -0.5 910,778 - -0.1 910,778 - -1.1 910,778 - -1.1 910,778 - -0.7 910,778 - -0.3 910,778 - -1.9 910,778 - +0.1 910,778 - -1.3 910,778 - -1.2 910,778 - -2.6 910,778 - -0.9 910,778 - -0.9 910,778 - -0.6 910,778 - +1.7 910,778 - +0.0 910,778 - -0.6 910,778 - -2.3 910,778 - +1.7 910,778 - -1.9 910,778 - -0.5 910,778 - -2.9 910,778 - +0.4 910,797 + -2.6 910,798 - -2.1 910,798 - -0.1 910,907 + PFR28_00837 0.33 -2.8 910,907 + PFR28_00837 0.33 -0.3 910,908 - PFR28_00837 0.33 -0.7 910,934 + PFR28_00837 0.40 +0.1 910,934 + PFR28_00837 0.40 +0.4 910,934 + PFR28_00837 0.40 -1.7 910,934 + PFR28_00837 0.40 -2.4 910,934 + PFR28_00837 0.40 -0.1 910,934 + PFR28_00837 0.40 -0.4 910,935 - PFR28_00837 0.40 -1.8 910,935 - PFR28_00837 0.40 -1.5 910,935 - PFR28_00837 0.40 -2.1 910,935 - PFR28_00837 0.40 -0.8 910,935 - PFR28_00837 0.40 -0.6 911,318 + -0.6 911,318 + -1.3 911,318 + -1.1 911,319 - +0.1 911,513 + PFR28_00838 0.20 +0.1 911,513 + PFR28_00838 0.20 -1.5 911,513 + PFR28_00838 0.20 -3.4 911,514 - PFR28_00838 0.20 -0.6 911,515 + PFR28_00838 0.20 -1.5 911,516 - PFR28_00838 0.20 -2.5 911,516 - PFR28_00838 0.20 -1.6 911,618 + PFR28_00838 0.26 -2.4 911,618 + PFR28_00838 0.26 -2.7 911,618 + PFR28_00838 0.26 -2.1 911,618 + PFR28_00838 0.26 -1.6 911,618 + PFR28_00838 0.26 -1.6 911,619 - PFR28_00838 0.26 -1.4 911,619 - PFR28_00838 0.26 -2.7 911,619 - PFR28_00838 0.26 -0.9 911,619 - PFR28_00838 0.26 -2.6 911,702 + PFR28_00838 0.31 -1.9 911,703 - PFR28_00838 0.31 -0.4 911,717 + PFR28_00838 0.31 -3.3 911,717 + PFR28_00838 0.31 -2.0 911,717 + PFR28_00838 0.31 -0.4 911,717 + PFR28_00838 0.31 -0.5 911,717 + PFR28_00838 0.31 -1.3 911,718 - PFR28_00838 0.32 -1.1 911,718 - PFR28_00838 0.32 -2.7 911,718 - PFR28_00838 0.32 -1.1 911,718 - PFR28_00838 0.32 -1.7 911,849 + PFR28_00838 0.39 -0.4 911,849 + PFR28_00838 0.39 -1.0 911,850 - PFR28_00838 0.39 +0.9 912,093 + PFR28_00838 0.53 +0.2 912,094 - PFR28_00838 0.54 -1.9 912,094 - PFR28_00838 0.54 -1.7 912,141 + PFR28_00838 0.56 -1.0
Or see this region's nucleotide sequence