Strain Fitness in Pseudomonas sp. RS175 around PFR28_00206

Experiment: D-Ribose carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00203 and PFR28_00204 are separated by 192 nucleotidesPFR28_00204 and PFR28_00205 overlap by 8 nucleotidesPFR28_00205 and PFR28_00206 are separated by 99 nucleotidesPFR28_00206 and PFR28_00207 are separated by 0 nucleotidesPFR28_00207 and PFR28_00208 are separated by 19 nucleotides PFR28_00203: PFR28_00203 - 5-aminovalerate aminotransferase DavT, at 229,224 to 230,474 _00203 PFR28_00204: PFR28_00204 - hypothetical protein, at 230,667 to 231,005 _00204 PFR28_00205: PFR28_00205 - hypothetical protein, at 230,998 to 231,294 _00205 PFR28_00206: PFR28_00206 - 'Dihydroneopterin triphosphate 2'-epimerase' transl_table=11, at 231,394 to 231,774 _00206 PFR28_00207: PFR28_00207 - GTP cyclohydrolase 1, at 231,775 to 232,335 _00207 PFR28_00208: PFR28_00208 - Dihydromonapterin reductase, at 232,355 to 233,065 _00208 Position (kb) 231 232Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 230.508 kb on + strandat 230.508 kb on + strandat 230.509 kb on - strandat 230.512 kb on + strandat 230.512 kb on + strandat 230.512 kb on + strandat 230.513 kb on - strandat 230.513 kb on - strandat 230.513 kb on - strandat 230.513 kb on - strandat 230.545 kb on + strandat 230.545 kb on + strandat 230.546 kb on - strandat 230.589 kb on + strandat 230.589 kb on + strandat 230.589 kb on + strandat 230.589 kb on + strandat 230.589 kb on + strandat 230.590 kb on - strandat 230.590 kb on - strandat 230.658 kb on + strandat 230.658 kb on + strandat 230.658 kb on + strandat 230.658 kb on + strandat 230.659 kb on - strandat 230.659 kb on - strandat 230.659 kb on - strandat 230.736 kb on - strand, within PFR28_00204at 230.779 kb on + strand, within PFR28_00204at 230.914 kb on + strand, within PFR28_00204at 230.915 kb on - strand, within PFR28_00204at 230.915 kb on - strand, within PFR28_00204at 230.915 kb on - strand, within PFR28_00204at 231.059 kb on + strand, within PFR28_00205at 231.080 kb on + strand, within PFR28_00205at 231.081 kb on - strand, within PFR28_00205at 231.093 kb on - strand, within PFR28_00205at 231.093 kb on - strand, within PFR28_00205at 231.156 kb on - strand, within PFR28_00205at 231.156 kb on - strand, within PFR28_00205at 231.156 kb on - strand, within PFR28_00205at 231.372 kb on + strandat 231.373 kb on - strandat 231.373 kb on - strandat 231.373 kb on - strandat 231.403 kb on - strandat 231.423 kb on + strandat 231.424 kb on - strandat 231.596 kb on + strand, within PFR28_00206at 231.596 kb on + strand, within PFR28_00206at 231.596 kb on + strand, within PFR28_00206at 231.596 kb on + strand, within PFR28_00206at 231.596 kb on + strand, within PFR28_00206at 231.597 kb on - strand, within PFR28_00206at 231.597 kb on - strand, within PFR28_00206at 231.597 kb on - strand, within PFR28_00206at 231.597 kb on - strand, within PFR28_00206at 231.648 kb on - strand, within PFR28_00206at 231.776 kb on + strandat 231.776 kb on + strandat 231.776 kb on + strandat 231.776 kb on + strandat 231.776 kb on + strandat 231.776 kb on + strandat 231.776 kb on + strandat 231.776 kb on + strandat 231.776 kb on + strandat 231.777 kb on - strandat 231.777 kb on - strandat 231.855 kb on + strand, within PFR28_00207at 231.855 kb on + strand, within PFR28_00207at 231.855 kb on + strand, within PFR28_00207at 231.856 kb on - strand, within PFR28_00207at 231.856 kb on - strand, within PFR28_00207at 231.856 kb on - strand, within PFR28_00207at 231.856 kb on - strand, within PFR28_00207at 231.856 kb on - strand, within PFR28_00207at 231.856 kb on - strand, within PFR28_00207at 232.065 kb on + strand, within PFR28_00207at 232.065 kb on + strand, within PFR28_00207at 232.065 kb on + strand, within PFR28_00207at 232.065 kb on + strand, within PFR28_00207at 232.065 kb on + strand, within PFR28_00207at 232.066 kb on - strand, within PFR28_00207at 232.066 kb on - strand, within PFR28_00207at 232.066 kb on - strand, within PFR28_00207at 232.066 kb on - strand, within PFR28_00207at 232.066 kb on - strand, within PFR28_00207at 232.066 kb on - strand, within PFR28_00207at 232.066 kb on - strand, within PFR28_00207at 232.066 kb on - strand, within PFR28_00207at 232.066 kb on - strand, within PFR28_00207at 232.066 kb on - strand, within PFR28_00207at 232.066 kb on - strand, within PFR28_00207at 232.066 kb on - strand, within PFR28_00207at 232.067 kb on + strand, within PFR28_00207at 232.067 kb on + strand, within PFR28_00207at 232.067 kb on + strand, within PFR28_00207at 232.067 kb on + strand, within PFR28_00207at 232.067 kb on + strand, within PFR28_00207at 232.067 kb on + strand, within PFR28_00207at 232.067 kb on + strand, within PFR28_00207at 232.067 kb on + strand, within PFR28_00207at 232.068 kb on - strand, within PFR28_00207at 232.068 kb on - strand, within PFR28_00207at 232.068 kb on - strand, within PFR28_00207at 232.121 kb on + strand, within PFR28_00207at 232.121 kb on + strand, within PFR28_00207at 232.121 kb on + strand, within PFR28_00207at 232.122 kb on - strand, within PFR28_00207at 232.122 kb on - strand, within PFR28_00207at 232.122 kb on - strand, within PFR28_00207at 232.122 kb on - strand, within PFR28_00207at 232.122 kb on - strand, within PFR28_00207at 232.122 kb on - strand, within PFR28_00207at 232.223 kb on + strand, within PFR28_00207at 232.224 kb on - strand, within PFR28_00207at 232.224 kb on - strand, within PFR28_00207at 232.224 kb on - strand, within PFR28_00207at 232.224 kb on - strand, within PFR28_00207at 232.356 kb on + strandat 232.404 kb on + strandat 232.404 kb on + strandat 232.404 kb on + strandat 232.404 kb on + strandat 232.404 kb on + strandat 232.404 kb on + strandat 232.404 kb on + strandat 232.404 kb on + strandat 232.405 kb on - strandat 232.405 kb on - strandat 232.405 kb on - strandat 232.405 kb on - strandat 232.405 kb on - strandat 232.422 kb on + strandat 232.422 kb on + strandat 232.438 kb on - strand, within PFR28_00208at 232.438 kb on - strand, within PFR28_00208at 232.526 kb on + strand, within PFR28_00208at 232.526 kb on + strand, within PFR28_00208at 232.526 kb on + strand, within PFR28_00208at 232.526 kb on + strand, within PFR28_00208at 232.526 kb on + strand, within PFR28_00208at 232.526 kb on + strand, within PFR28_00208at 232.527 kb on - strand, within PFR28_00208at 232.569 kb on + strand, within PFR28_00208at 232.569 kb on + strand, within PFR28_00208at 232.569 kb on + strand, within PFR28_00208at 232.569 kb on + strand, within PFR28_00208at 232.569 kb on + strand, within PFR28_00208at 232.570 kb on - strand, within PFR28_00208at 232.570 kb on - strand, within PFR28_00208at 232.624 kb on - strand, within PFR28_00208at 232.748 kb on + strand, within PFR28_00208at 232.749 kb on - strand, within PFR28_00208at 232.749 kb on - strand, within PFR28_00208at 232.749 kb on - strand, within PFR28_00208

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose carbon 10 mM
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230,508 + -0.5
230,508 + +0.3
230,509 - -1.0
230,512 + -1.1
230,512 + -0.8
230,512 + +0.9
230,513 - -0.3
230,513 - +0.2
230,513 - +0.3
230,513 - +0.4
230,545 + +1.2
230,545 + -0.1
230,546 - +0.6
230,589 + -0.5
230,589 + -0.5
230,589 + +0.3
230,589 + +0.2
230,589 + +1.5
230,590 - +1.0
230,590 - -1.3
230,658 + +0.7
230,658 + +0.6
230,658 + +1.2
230,658 + -1.0
230,659 - +0.1
230,659 - -1.9
230,659 - +0.6
230,736 - PFR28_00204 0.20 -0.4
230,779 + PFR28_00204 0.33 -1.2
230,914 + PFR28_00204 0.73 -0.3
230,915 - PFR28_00204 0.73 +1.0
230,915 - PFR28_00204 0.73 +0.1
230,915 - PFR28_00204 0.73 -0.5
231,059 + PFR28_00205 0.21 -0.5
231,080 + PFR28_00205 0.28 +0.0
231,081 - PFR28_00205 0.28 +0.1
231,093 - PFR28_00205 0.32 +1.6
231,093 - PFR28_00205 0.32 +2.2
231,156 - PFR28_00205 0.53 -1.5
231,156 - PFR28_00205 0.53 +0.2
231,156 - PFR28_00205 0.53 +0.9
231,372 + +0.9
231,373 - +0.2
231,373 - -2.5
231,373 - -3.5
231,403 - +0.9
231,423 + +1.0
231,424 - +0.4
231,596 + PFR28_00206 0.53 +0.0
231,596 + PFR28_00206 0.53 -0.2
231,596 + PFR28_00206 0.53 +0.1
231,596 + PFR28_00206 0.53 -1.6
231,596 + PFR28_00206 0.53 -0.5
231,597 - PFR28_00206 0.53 -1.3
231,597 - PFR28_00206 0.53 -0.5
231,597 - PFR28_00206 0.53 -1.9
231,597 - PFR28_00206 0.53 -0.1
231,648 - PFR28_00206 0.67 -1.7
231,776 + -0.4
231,776 + +0.5
231,776 + -0.3
231,776 + -0.7
231,776 + +0.4
231,776 + +0.9
231,776 + +0.5
231,776 + -0.2
231,776 + -1.2
231,777 - +0.4
231,777 - -2.2
231,855 + PFR28_00207 0.14 +0.6
231,855 + PFR28_00207 0.14 +0.9
231,855 + PFR28_00207 0.14 -1.6
231,856 - PFR28_00207 0.14 -0.7
231,856 - PFR28_00207 0.14 -0.5
231,856 - PFR28_00207 0.14 -0.0
231,856 - PFR28_00207 0.14 -1.7
231,856 - PFR28_00207 0.14 +0.9
231,856 - PFR28_00207 0.14 -0.4
232,065 + PFR28_00207 0.52 -0.9
232,065 + PFR28_00207 0.52 +0.1
232,065 + PFR28_00207 0.52 -0.2
232,065 + PFR28_00207 0.52 +1.6
232,065 + PFR28_00207 0.52 -0.6
232,066 - PFR28_00207 0.52 -0.6
232,066 - PFR28_00207 0.52 -0.1
232,066 - PFR28_00207 0.52 +1.0
232,066 - PFR28_00207 0.52 +0.3
232,066 - PFR28_00207 0.52 -0.6
232,066 - PFR28_00207 0.52 +1.0
232,066 - PFR28_00207 0.52 +0.6
232,066 - PFR28_00207 0.52 +0.6
232,066 - PFR28_00207 0.52 -0.9
232,066 - PFR28_00207 0.52 -0.1
232,066 - PFR28_00207 0.52 -0.5
232,066 - PFR28_00207 0.52 +0.4
232,067 + PFR28_00207 0.52 -1.3
232,067 + PFR28_00207 0.52 +0.3
232,067 + PFR28_00207 0.52 -2.4
232,067 + PFR28_00207 0.52 -0.5
232,067 + PFR28_00207 0.52 +0.9
232,067 + PFR28_00207 0.52 +0.2
232,067 + PFR28_00207 0.52 -0.6
232,067 + PFR28_00207 0.52 -0.4
232,068 - PFR28_00207 0.52 +0.1
232,068 - PFR28_00207 0.52 +1.0
232,068 - PFR28_00207 0.52 -0.2
232,121 + PFR28_00207 0.62 -0.7
232,121 + PFR28_00207 0.62 -1.4
232,121 + PFR28_00207 0.62 +0.9
232,122 - PFR28_00207 0.62 -0.9
232,122 - PFR28_00207 0.62 +0.0
232,122 - PFR28_00207 0.62 +0.1
232,122 - PFR28_00207 0.62 -0.8
232,122 - PFR28_00207 0.62 +0.2
232,122 - PFR28_00207 0.62 +0.0
232,223 + PFR28_00207 0.80 -0.0
232,224 - PFR28_00207 0.80 -1.3
232,224 - PFR28_00207 0.80 +0.2
232,224 - PFR28_00207 0.80 +0.4
232,224 - PFR28_00207 0.80 +1.0
232,356 + -0.0
232,404 + -2.0
232,404 + +0.2
232,404 + +0.8
232,404 + -0.9
232,404 + -0.5
232,404 + +0.4
232,404 + +1.1
232,404 + +0.9
232,405 - +0.9
232,405 - -0.5
232,405 - -1.9
232,405 - +0.0
232,405 - +0.1
232,422 + +1.3
232,422 + -1.7
232,438 - PFR28_00208 0.12 -1.9
232,438 - PFR28_00208 0.12 -0.6
232,526 + PFR28_00208 0.24 -0.1
232,526 + PFR28_00208 0.24 -0.7
232,526 + PFR28_00208 0.24 +0.6
232,526 + PFR28_00208 0.24 -1.1
232,526 + PFR28_00208 0.24 -0.5
232,526 + PFR28_00208 0.24 +1.1
232,527 - PFR28_00208 0.24 +1.2
232,569 + PFR28_00208 0.30 -0.3
232,569 + PFR28_00208 0.30 -0.8
232,569 + PFR28_00208 0.30 -0.5
232,569 + PFR28_00208 0.30 +0.5
232,569 + PFR28_00208 0.30 -0.5
232,570 - PFR28_00208 0.30 -0.6
232,570 - PFR28_00208 0.30 -0.4
232,624 - PFR28_00208 0.38 +0.7
232,748 + PFR28_00208 0.55 +0.3
232,749 - PFR28_00208 0.55 -1.5
232,749 - PFR28_00208 0.55 -0.5
232,749 - PFR28_00208 0.55 +0.5

Or see this region's nucleotide sequence