Experiment: D-Ribose carbon 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00066 and PFR28_00067 are separated by 7 nucleotides PFR28_00067 and PFR28_00068 are separated by 11 nucleotides PFR28_00068 and PFR28_00069 are separated by 61 nucleotides PFR28_00069 and PFR28_00070 are separated by 97 nucleotides PFR28_00070 and PFR28_00071 are separated by 54 nucleotides
PFR28_00066: PFR28_00066 - hypothetical protein, at 76,420 to 77,823
_00066
PFR28_00067: PFR28_00067 - Ribosome association toxin RatA, at 77,831 to 78,274
_00067
PFR28_00068: PFR28_00068 - hypothetical protein, at 78,286 to 78,573
_00068
PFR28_00069: PFR28_00069 - Outer membrane protein assembly factor BamE, at 78,635 to 79,162
_00069
PFR28_00070: PFR28_00070 - Ferric uptake regulation protein, at 79,260 to 79,664
_00070
PFR28_00071: PFR28_00071 - DNA repair protein RecN, at 79,719 to 81,392
_00071
Position (kb) 78
79
80 Strain fitness (log2 ratio) -2
-1
0
1
2 at 77.672 kb on + strand, within PFR28_00066 at 77.673 kb on - strand, within PFR28_00066 at 77.709 kb on - strand at 77.770 kb on + strand at 77.770 kb on + strand at 77.770 kb on + strand at 77.770 kb on + strand at 77.770 kb on + strand at 77.770 kb on + strand at 77.770 kb on + strand at 77.828 kb on + strand at 77.828 kb on + strand at 77.828 kb on + strand at 77.828 kb on + strand at 77.828 kb on + strand at 77.828 kb on + strand at 77.828 kb on + strand at 77.828 kb on + strand at 77.842 kb on + strand at 78.281 kb on + strand at 78.282 kb on - strand at 78.282 kb on - strand at 78.282 kb on - strand at 78.282 kb on - strand at 78.292 kb on + strand at 78.292 kb on + strand at 78.292 kb on + strand at 78.292 kb on + strand at 78.292 kb on + strand at 78.293 kb on - strand at 78.293 kb on - strand at 78.293 kb on - strand at 78.293 kb on - strand at 78.293 kb on - strand at 78.491 kb on - strand, within PFR28_00068 at 78.567 kb on + strand at 78.567 kb on + strand at 78.567 kb on + strand at 78.568 kb on - strand at 78.568 kb on - strand at 78.568 kb on - strand at 78.568 kb on - strand at 78.571 kb on + strand at 78.571 kb on + strand at 78.572 kb on - strand at 78.572 kb on - strand at 78.572 kb on - strand at 78.572 kb on - strand at 78.587 kb on - strand at 78.595 kb on + strand at 78.787 kb on + strand, within PFR28_00069 at 78.787 kb on + strand, within PFR28_00069 at 78.788 kb on - strand, within PFR28_00069 at 78.788 kb on - strand, within PFR28_00069 at 78.788 kb on - strand, within PFR28_00069 at 79.652 kb on + strand at 79.662 kb on + strand at 79.663 kb on - strand at 79.678 kb on - strand at 79.678 kb on - strand at 79.705 kb on + strand at 79.706 kb on - strand at 79.845 kb on - strand at 79.866 kb on + strand at 79.866 kb on + strand at 79.867 kb on - strand at 79.867 kb on - strand at 79.959 kb on + strand, within PFR28_00071 at 79.959 kb on + strand, within PFR28_00071 at 79.960 kb on - strand, within PFR28_00071 at 80.020 kb on - strand, within PFR28_00071 at 80.148 kb on + strand, within PFR28_00071 at 80.149 kb on - strand, within PFR28_00071 at 80.149 kb on - strand, within PFR28_00071 at 80.149 kb on - strand, within PFR28_00071
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose carbon 10 mM remove 77,672 + PFR28_00066 0.89 -0.2 77,673 - PFR28_00066 0.89 -2.2 77,709 - +1.1 77,770 + -1.8 77,770 + +0.2 77,770 + +0.5 77,770 + +0.0 77,770 + +0.6 77,770 + -0.2 77,770 + -0.8 77,828 + -0.1 77,828 + +0.0 77,828 + -0.5 77,828 + +0.8 77,828 + +0.5 77,828 + -1.1 77,828 + +0.4 77,828 + +0.2 77,842 + -1.3 78,281 + +1.7 78,282 - +0.6 78,282 - -0.5 78,282 - +0.2 78,282 - -0.3 78,292 + +0.8 78,292 + +1.1 78,292 + +0.3 78,292 + +1.0 78,292 + +0.5 78,293 - +0.1 78,293 - -1.8 78,293 - +0.1 78,293 - -0.5 78,293 - -1.7 78,491 - PFR28_00068 0.71 +0.3 78,567 + +0.6 78,567 + +0.2 78,567 + +0.6 78,568 - -0.9 78,568 - +0.0 78,568 - -0.6 78,568 - -0.5 78,571 + +2.3 78,571 + +0.7 78,572 - -0.4 78,572 - -0.3 78,572 - -0.7 78,572 - -0.8 78,587 - -0.6 78,595 + +0.6 78,787 + PFR28_00069 0.29 -0.1 78,787 + PFR28_00069 0.29 -0.6 78,788 - PFR28_00069 0.29 -0.8 78,788 - PFR28_00069 0.29 -1.2 78,788 - PFR28_00069 0.29 -1.9 79,652 + -0.2 79,662 + +0.1 79,663 - -1.0 79,678 - +0.2 79,678 - +2.5 79,705 + -0.2 79,706 - +0.7 79,845 - +0.5 79,866 + -0.3 79,866 + -0.3 79,867 - +0.5 79,867 - +0.1 79,959 + PFR28_00071 0.14 -0.3 79,959 + PFR28_00071 0.14 -0.5 79,960 - PFR28_00071 0.14 -0.8 80,020 - PFR28_00071 0.18 +0.3 80,148 + PFR28_00071 0.26 -0.1 80,149 - PFR28_00071 0.26 -2.1 80,149 - PFR28_00071 0.26 +0.5 80,149 - PFR28_00071 0.26 -1.3
Or see this region's nucleotide sequence