Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24800 and IAI46_24805 are separated by 3 nucleotides IAI46_24805 and IAI46_24810 are separated by 0 nucleotides IAI46_24810 and IAI46_24815 are separated by 79 nucleotides IAI46_24815 and IAI46_24820 are separated by 11 nucleotides IAI46_24820 and IAI46_24825 are separated by 263 nucleotides
IAI46_24800: IAI46_24800 - glycosyltransferase family 2 protein, at 5,294,084 to 5,294,857
_24800
IAI46_24805: IAI46_24805 - pantetheine-phosphate adenylyltransferase, at 5,294,861 to 5,295,346
_24805
IAI46_24810: IAI46_24810 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 5,295,347 to 5,296,156
_24810
IAI46_24815: IAI46_24815 - 50S ribosomal protein L33, at 5,296,236 to 5,296,403
_24815
IAI46_24820: IAI46_24820 - 50S ribosomal protein L28, at 5,296,415 to 5,296,651
_24820
IAI46_24825: IAI46_24825 - DNA repair protein RadC, at 5,296,915 to 5,297,598
_24825
Position (kb) 5295
5296
5297 Strain fitness (log2 ratio) -1
0
1
2 at 5294.405 kb on - strand, within IAI46_24800 at 5294.800 kb on + strand at 5294.813 kb on + strand at 5295.345 kb on - strand at 5295.345 kb on - strand at 5295.345 kb on - strand at 5295.345 kb on - strand at 5295.447 kb on + strand, within IAI46_24810 at 5295.448 kb on - strand, within IAI46_24810 at 5295.482 kb on - strand, within IAI46_24810 at 5295.626 kb on - strand, within IAI46_24810 at 5295.645 kb on + strand, within IAI46_24810 at 5295.646 kb on - strand, within IAI46_24810 at 5295.646 kb on - strand, within IAI46_24810 at 5295.646 kb on - strand, within IAI46_24810 at 5295.676 kb on + strand, within IAI46_24810 at 5295.732 kb on + strand, within IAI46_24810 at 5295.732 kb on + strand, within IAI46_24810 at 5295.732 kb on + strand, within IAI46_24810 at 5295.733 kb on - strand, within IAI46_24810 at 5295.733 kb on - strand, within IAI46_24810 at 5295.743 kb on - strand, within IAI46_24810 at 5295.841 kb on + strand, within IAI46_24810 at 5295.841 kb on + strand, within IAI46_24810 at 5295.843 kb on + strand, within IAI46_24810 at 5295.843 kb on + strand, within IAI46_24810 at 5295.844 kb on - strand, within IAI46_24810 at 5295.844 kb on - strand, within IAI46_24810 at 5295.953 kb on - strand, within IAI46_24810 at 5295.984 kb on + strand, within IAI46_24810 at 5295.984 kb on + strand, within IAI46_24810 at 5295.984 kb on + strand, within IAI46_24810 at 5295.985 kb on - strand, within IAI46_24810 at 5295.985 kb on - strand, within IAI46_24810 at 5296.107 kb on + strand at 5296.108 kb on - strand at 5296.108 kb on - strand at 5296.189 kb on - strand at 5296.884 kb on - strand at 5296.960 kb on + strand at 5296.960 kb on + strand at 5296.960 kb on + strand at 5296.960 kb on + strand at 5296.960 kb on + strand at 5296.960 kb on + strand at 5296.961 kb on - strand at 5296.963 kb on - strand at 5296.993 kb on + strand, within IAI46_24825 at 5297.056 kb on - strand, within IAI46_24825 at 5297.071 kb on - strand, within IAI46_24825 at 5297.071 kb on - strand, within IAI46_24825 at 5297.071 kb on - strand, within IAI46_24825 at 5297.071 kb on - strand, within IAI46_24825 at 5297.083 kb on - strand, within IAI46_24825 at 5297.098 kb on - strand, within IAI46_24825 at 5297.134 kb on + strand, within IAI46_24825 at 5297.134 kb on + strand, within IAI46_24825 at 5297.135 kb on - strand, within IAI46_24825 at 5297.135 kb on - strand, within IAI46_24825 at 5297.135 kb on - strand, within IAI46_24825 at 5297.154 kb on + strand, within IAI46_24825 at 5297.155 kb on - strand, within IAI46_24825 at 5297.155 kb on - strand, within IAI46_24825 at 5297.155 kb on - strand, within IAI46_24825 at 5297.155 kb on - strand, within IAI46_24825
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 5,294,405 - IAI46_24800 0.41 +0.3 5,294,800 + +0.6 5,294,813 + +0.6 5,295,345 - -0.4 5,295,345 - -0.0 5,295,345 - +0.3 5,295,345 - -0.3 5,295,447 + IAI46_24810 0.12 +0.9 5,295,448 - IAI46_24810 0.12 -0.4 5,295,482 - IAI46_24810 0.17 +0.1 5,295,626 - IAI46_24810 0.34 +0.4 5,295,645 + IAI46_24810 0.37 -0.5 5,295,646 - IAI46_24810 0.37 +0.3 5,295,646 - IAI46_24810 0.37 -1.6 5,295,646 - IAI46_24810 0.37 +0.9 5,295,676 + IAI46_24810 0.41 +0.1 5,295,732 + IAI46_24810 0.48 -0.8 5,295,732 + IAI46_24810 0.48 +0.5 5,295,732 + IAI46_24810 0.48 -0.0 5,295,733 - IAI46_24810 0.48 +0.9 5,295,733 - IAI46_24810 0.48 -0.3 5,295,743 - IAI46_24810 0.49 +0.0 5,295,841 + IAI46_24810 0.61 -1.5 5,295,841 + IAI46_24810 0.61 +1.0 5,295,843 + IAI46_24810 0.61 +0.7 5,295,843 + IAI46_24810 0.61 +0.1 5,295,844 - IAI46_24810 0.61 -0.3 5,295,844 - IAI46_24810 0.61 -0.1 5,295,953 - IAI46_24810 0.75 +0.8 5,295,984 + IAI46_24810 0.79 -0.7 5,295,984 + IAI46_24810 0.79 -1.4 5,295,984 + IAI46_24810 0.79 -0.3 5,295,985 - IAI46_24810 0.79 -1.3 5,295,985 - IAI46_24810 0.79 -0.2 5,296,107 + -1.1 5,296,108 - +0.6 5,296,108 - -0.1 5,296,189 - +0.4 5,296,884 - +0.3 5,296,960 + +0.4 5,296,960 + +0.7 5,296,960 + +0.0 5,296,960 + +0.3 5,296,960 + +0.9 5,296,960 + +0.9 5,296,961 - +0.4 5,296,963 - -0.7 5,296,993 + IAI46_24825 0.11 +0.1 5,297,056 - IAI46_24825 0.21 -0.2 5,297,071 - IAI46_24825 0.23 +0.3 5,297,071 - IAI46_24825 0.23 +0.2 5,297,071 - IAI46_24825 0.23 +1.2 5,297,071 - IAI46_24825 0.23 +1.0 5,297,083 - IAI46_24825 0.25 +0.7 5,297,098 - IAI46_24825 0.27 +0.2 5,297,134 + IAI46_24825 0.32 +0.7 5,297,134 + IAI46_24825 0.32 +1.2 5,297,135 - IAI46_24825 0.32 +0.9 5,297,135 - IAI46_24825 0.32 +0.7 5,297,135 - IAI46_24825 0.32 +0.3 5,297,154 + IAI46_24825 0.35 -1.4 5,297,155 - IAI46_24825 0.35 -0.2 5,297,155 - IAI46_24825 0.35 +2.0 5,297,155 - IAI46_24825 0.35 +0.6 5,297,155 - IAI46_24825 0.35 -0.7
Or see this region's nucleotide sequence