Strain Fitness in Serratia liquefaciens MT49 around IAI46_24755

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24750 and IAI46_24755 are separated by 28 nucleotidesIAI46_24755 and IAI46_24760 are separated by 4 nucleotidesIAI46_24760 and IAI46_24765 are separated by 1 nucleotides IAI46_24750: IAI46_24750 - glycosyltransferase, at 5,282,641 to 5,283,804 _24750 IAI46_24755: IAI46_24755 - O-antigen ligase family protein, at 5,283,833 to 5,285,071 _24755 IAI46_24760: IAI46_24760 - glycosyltransferase, at 5,285,076 to 5,286,059 _24760 IAI46_24765: IAI46_24765 - glycosyltransferase family 9 protein, at 5,286,061 to 5,287,158 _24765 Position (kb) 5283 5284 5285 5286Strain fitness (log2 ratio) -2 -1 0 1at 5282.966 kb on - strand, within IAI46_24750at 5283.399 kb on + strand, within IAI46_24750at 5283.399 kb on + strand, within IAI46_24750at 5283.399 kb on + strand, within IAI46_24750at 5283.399 kb on + strand, within IAI46_24750at 5283.399 kb on + strand, within IAI46_24750at 5283.399 kb on + strand, within IAI46_24750at 5283.400 kb on - strand, within IAI46_24750at 5283.400 kb on - strand, within IAI46_24750at 5283.400 kb on - strand, within IAI46_24750at 5283.400 kb on - strand, within IAI46_24750at 5283.400 kb on - strand, within IAI46_24750at 5283.400 kb on - strand, within IAI46_24750at 5283.403 kb on + strand, within IAI46_24750at 5283.403 kb on + strand, within IAI46_24750at 5283.403 kb on + strand, within IAI46_24750at 5283.403 kb on + strand, within IAI46_24750at 5283.404 kb on - strand, within IAI46_24750at 5283.404 kb on - strand, within IAI46_24750at 5283.404 kb on - strand, within IAI46_24750at 5283.404 kb on - strand, within IAI46_24750at 5283.404 kb on - strand, within IAI46_24750at 5283.404 kb on - strand, within IAI46_24750at 5283.412 kb on - strand, within IAI46_24750at 5283.437 kb on + strand, within IAI46_24750at 5283.476 kb on + strand, within IAI46_24750at 5283.476 kb on + strand, within IAI46_24750at 5283.607 kb on + strand, within IAI46_24750at 5283.700 kb on + strandat 5283.708 kb on + strandat 5283.709 kb on - strandat 5283.709 kb on - strandat 5283.751 kb on + strandat 5283.752 kb on - strandat 5283.756 kb on + strandat 5283.756 kb on + strandat 5283.796 kb on - strandat 5283.796 kb on - strandat 5283.796 kb on - strandat 5283.802 kb on + strandat 5283.802 kb on + strandat 5283.802 kb on + strandat 5283.803 kb on - strandat 5283.803 kb on - strandat 5283.808 kb on + strandat 5283.808 kb on + strandat 5283.808 kb on + strandat 5283.809 kb on - strandat 5283.809 kb on - strandat 5283.840 kb on + strandat 5283.840 kb on + strandat 5283.841 kb on - strandat 5283.865 kb on + strandat 5283.875 kb on + strandat 5283.876 kb on - strandat 5283.876 kb on - strandat 5283.884 kb on + strandat 5283.885 kb on - strandat 5283.910 kb on + strandat 5283.910 kb on + strandat 5283.910 kb on + strandat 5283.911 kb on - strandat 5283.911 kb on - strandat 5283.913 kb on + strandat 5283.914 kb on - strandat 5283.962 kb on + strand, within IAI46_24755at 5283.962 kb on + strand, within IAI46_24755at 5283.963 kb on - strand, within IAI46_24755at 5283.963 kb on - strand, within IAI46_24755at 5283.964 kb on + strand, within IAI46_24755at 5283.965 kb on - strand, within IAI46_24755at 5283.987 kb on + strand, within IAI46_24755at 5284.001 kb on + strand, within IAI46_24755at 5284.007 kb on - strand, within IAI46_24755at 5284.024 kb on + strand, within IAI46_24755at 5284.085 kb on - strand, within IAI46_24755at 5284.085 kb on - strand, within IAI46_24755at 5284.100 kb on + strand, within IAI46_24755at 5284.100 kb on + strand, within IAI46_24755at 5284.101 kb on - strand, within IAI46_24755at 5284.108 kb on + strand, within IAI46_24755at 5284.121 kb on + strand, within IAI46_24755at 5284.121 kb on + strand, within IAI46_24755at 5284.121 kb on + strand, within IAI46_24755at 5284.121 kb on + strand, within IAI46_24755at 5284.121 kb on + strand, within IAI46_24755at 5284.122 kb on - strand, within IAI46_24755at 5284.122 kb on - strand, within IAI46_24755at 5284.122 kb on - strand, within IAI46_24755at 5284.122 kb on - strand, within IAI46_24755at 5284.122 kb on - strand, within IAI46_24755at 5284.177 kb on - strand, within IAI46_24755at 5284.207 kb on + strand, within IAI46_24755at 5284.207 kb on + strand, within IAI46_24755at 5284.257 kb on - strand, within IAI46_24755at 5284.288 kb on - strand, within IAI46_24755at 5284.295 kb on - strand, within IAI46_24755at 5284.309 kb on + strand, within IAI46_24755at 5284.323 kb on - strand, within IAI46_24755at 5284.382 kb on + strand, within IAI46_24755at 5284.397 kb on + strand, within IAI46_24755at 5284.397 kb on + strand, within IAI46_24755at 5284.398 kb on - strand, within IAI46_24755at 5284.399 kb on + strand, within IAI46_24755at 5284.399 kb on + strand, within IAI46_24755at 5284.400 kb on - strand, within IAI46_24755at 5284.422 kb on + strand, within IAI46_24755at 5284.492 kb on - strand, within IAI46_24755at 5284.539 kb on + strand, within IAI46_24755at 5284.539 kb on + strand, within IAI46_24755at 5284.540 kb on - strand, within IAI46_24755at 5284.548 kb on + strand, within IAI46_24755at 5284.554 kb on + strand, within IAI46_24755at 5284.583 kb on - strand, within IAI46_24755at 5284.583 kb on - strand, within IAI46_24755at 5284.604 kb on - strand, within IAI46_24755at 5284.664 kb on - strand, within IAI46_24755at 5284.686 kb on + strand, within IAI46_24755at 5284.759 kb on + strand, within IAI46_24755at 5284.759 kb on + strand, within IAI46_24755at 5284.759 kb on + strand, within IAI46_24755at 5284.760 kb on - strand, within IAI46_24755at 5284.761 kb on + strand, within IAI46_24755at 5284.761 kb on + strand, within IAI46_24755at 5284.761 kb on + strand, within IAI46_24755at 5284.784 kb on + strand, within IAI46_24755at 5284.785 kb on - strand, within IAI46_24755at 5284.791 kb on + strand, within IAI46_24755at 5284.791 kb on + strand, within IAI46_24755at 5284.792 kb on - strand, within IAI46_24755at 5284.792 kb on - strand, within IAI46_24755at 5284.799 kb on + strand, within IAI46_24755at 5284.799 kb on + strand, within IAI46_24755at 5284.799 kb on + strand, within IAI46_24755at 5284.799 kb on + strand, within IAI46_24755at 5284.800 kb on - strand, within IAI46_24755at 5284.801 kb on + strand, within IAI46_24755at 5284.801 kb on + strand, within IAI46_24755at 5284.802 kb on - strand, within IAI46_24755at 5284.802 kb on - strand, within IAI46_24755at 5284.802 kb on - strand, within IAI46_24755at 5284.804 kb on - strand, within IAI46_24755at 5284.813 kb on + strand, within IAI46_24755at 5284.813 kb on + strand, within IAI46_24755at 5284.872 kb on + strand, within IAI46_24755at 5284.883 kb on + strand, within IAI46_24755at 5284.883 kb on + strand, within IAI46_24755at 5284.883 kb on + strand, within IAI46_24755at 5284.884 kb on - strand, within IAI46_24755at 5284.884 kb on - strand, within IAI46_24755at 5284.894 kb on - strand, within IAI46_24755at 5284.908 kb on + strand, within IAI46_24755at 5284.962 kb on - strandat 5284.980 kb on + strandat 5284.981 kb on - strandat 5284.987 kb on + strandat 5284.988 kb on - strandat 5284.999 kb on + strandat 5285.069 kb on + strandat 5285.070 kb on - strandat 5285.276 kb on + strand, within IAI46_24760at 5285.277 kb on - strand, within IAI46_24760at 5285.277 kb on - strand, within IAI46_24760at 5285.343 kb on + strand, within IAI46_24760at 5285.441 kb on + strand, within IAI46_24760at 5285.509 kb on - strand, within IAI46_24760at 5285.549 kb on - strand, within IAI46_24760at 5285.586 kb on + strand, within IAI46_24760at 5285.706 kb on + strand, within IAI46_24760at 5285.706 kb on + strand, within IAI46_24760at 5285.707 kb on - strand, within IAI46_24760at 5285.707 kb on - strand, within IAI46_24760at 5285.721 kb on - strand, within IAI46_24760at 5285.760 kb on - strand, within IAI46_24760at 5285.899 kb on - strand, within IAI46_24760at 5285.905 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.914 kb on - strand, within IAI46_24760at 5285.914 kb on - strand, within IAI46_24760at 5285.929 kb on + strand, within IAI46_24760at 5285.930 kb on - strand, within IAI46_24760at 5285.933 kb on + strand, within IAI46_24760at 5285.933 kb on + strand, within IAI46_24760at 5285.933 kb on + strand, within IAI46_24760at 5285.934 kb on - strand, within IAI46_24760at 5285.934 kb on - strand, within IAI46_24760at 5286.070 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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5,282,966 - IAI46_24750 0.28 -0.4
5,283,399 + IAI46_24750 0.65 -0.0
5,283,399 + IAI46_24750 0.65 -0.2
5,283,399 + IAI46_24750 0.65 -0.2
5,283,399 + IAI46_24750 0.65 -0.0
5,283,399 + IAI46_24750 0.65 +0.6
5,283,399 + IAI46_24750 0.65 +0.3
5,283,400 - IAI46_24750 0.65 -0.9
5,283,400 - IAI46_24750 0.65 -1.2
5,283,400 - IAI46_24750 0.65 +0.3
5,283,400 - IAI46_24750 0.65 -0.2
5,283,400 - IAI46_24750 0.65 -0.9
5,283,400 - IAI46_24750 0.65 +0.3
5,283,403 + IAI46_24750 0.65 +0.6
5,283,403 + IAI46_24750 0.65 -2.3
5,283,403 + IAI46_24750 0.65 +0.3
5,283,403 + IAI46_24750 0.65 -1.0
5,283,404 - IAI46_24750 0.66 -0.4
5,283,404 - IAI46_24750 0.66 -0.2
5,283,404 - IAI46_24750 0.66 -0.4
5,283,404 - IAI46_24750 0.66 +0.3
5,283,404 - IAI46_24750 0.66 -0.6
5,283,404 - IAI46_24750 0.66 -0.0
5,283,412 - IAI46_24750 0.66 +0.6
5,283,437 + IAI46_24750 0.68 +0.6
5,283,476 + IAI46_24750 0.72 -0.4
5,283,476 + IAI46_24750 0.72 +0.3
5,283,607 + IAI46_24750 0.83 -0.7
5,283,700 + -1.5
5,283,708 + -0.9
5,283,709 - +0.6
5,283,709 - +0.5
5,283,751 + -0.8
5,283,752 - -0.7
5,283,756 + -0.4
5,283,756 + -0.1
5,283,796 - -1.2
5,283,796 - +0.2
5,283,796 - -1.9
5,283,802 + +0.8
5,283,802 + +0.3
5,283,802 + -0.2
5,283,803 - -2.6
5,283,803 - -1.1
5,283,808 + +0.9
5,283,808 + -0.4
5,283,808 + -0.9
5,283,809 - -0.7
5,283,809 - -1.1
5,283,840 + -0.5
5,283,840 + -0.6
5,283,841 - +0.6
5,283,865 + -0.7
5,283,875 + -1.6
5,283,876 - -0.2
5,283,876 - -0.7
5,283,884 + -0.6
5,283,885 - +0.6
5,283,910 + -2.2
5,283,910 + -1.9
5,283,910 + -1.5
5,283,911 - -0.7
5,283,911 - -1.6
5,283,913 + -0.7
5,283,914 - -1.7
5,283,962 + IAI46_24755 0.10 -0.6
5,283,962 + IAI46_24755 0.10 -2.3
5,283,963 - IAI46_24755 0.10 -0.7
5,283,963 - IAI46_24755 0.10 -1.0
5,283,964 + IAI46_24755 0.11 -2.1
5,283,965 - IAI46_24755 0.11 -1.0
5,283,987 + IAI46_24755 0.12 -0.2
5,284,001 + IAI46_24755 0.14 -1.0
5,284,007 - IAI46_24755 0.14 -0.4
5,284,024 + IAI46_24755 0.15 -0.9
5,284,085 - IAI46_24755 0.20 -0.7
5,284,085 - IAI46_24755 0.20 -0.2
5,284,100 + IAI46_24755 0.22 +0.6
5,284,100 + IAI46_24755 0.22 -1.4
5,284,101 - IAI46_24755 0.22 -0.0
5,284,108 + IAI46_24755 0.22 +0.3
5,284,121 + IAI46_24755 0.23 -1.3
5,284,121 + IAI46_24755 0.23 -1.4
5,284,121 + IAI46_24755 0.23 -0.0
5,284,121 + IAI46_24755 0.23 -0.4
5,284,121 + IAI46_24755 0.23 -0.9
5,284,122 - IAI46_24755 0.23 +0.3
5,284,122 - IAI46_24755 0.23 -0.9
5,284,122 - IAI46_24755 0.23 -0.2
5,284,122 - IAI46_24755 0.23 -1.1
5,284,122 - IAI46_24755 0.23 -1.3
5,284,177 - IAI46_24755 0.28 -1.2
5,284,207 + IAI46_24755 0.30 -0.0
5,284,207 + IAI46_24755 0.30 -0.0
5,284,257 - IAI46_24755 0.34 -0.7
5,284,288 - IAI46_24755 0.37 -1.1
5,284,295 - IAI46_24755 0.37 -0.6
5,284,309 + IAI46_24755 0.38 -0.2
5,284,323 - IAI46_24755 0.40 -0.2
5,284,382 + IAI46_24755 0.44 -0.4
5,284,397 + IAI46_24755 0.46 -0.6
5,284,397 + IAI46_24755 0.46 -1.2
5,284,398 - IAI46_24755 0.46 -0.0
5,284,399 + IAI46_24755 0.46 -0.0
5,284,399 + IAI46_24755 0.46 +0.3
5,284,400 - IAI46_24755 0.46 +0.6
5,284,422 + IAI46_24755 0.48 -0.9
5,284,492 - IAI46_24755 0.53 -0.2
5,284,539 + IAI46_24755 0.57 -1.6
5,284,539 + IAI46_24755 0.57 -1.6
5,284,540 - IAI46_24755 0.57 +0.6
5,284,548 + IAI46_24755 0.58 -0.0
5,284,554 + IAI46_24755 0.58 +0.3
5,284,583 - IAI46_24755 0.61 -0.2
5,284,583 - IAI46_24755 0.61 -1.9
5,284,604 - IAI46_24755 0.62 -1.0
5,284,664 - IAI46_24755 0.67 -0.9
5,284,686 + IAI46_24755 0.69 +0.6
5,284,759 + IAI46_24755 0.75 -1.7
5,284,759 + IAI46_24755 0.75 -1.1
5,284,759 + IAI46_24755 0.75 -2.3
5,284,760 - IAI46_24755 0.75 -1.5
5,284,761 + IAI46_24755 0.75 -0.2
5,284,761 + IAI46_24755 0.75 +0.5
5,284,761 + IAI46_24755 0.75 -1.3
5,284,784 + IAI46_24755 0.77 -1.1
5,284,785 - IAI46_24755 0.77 -2.0
5,284,791 + IAI46_24755 0.77 -1.2
5,284,791 + IAI46_24755 0.77 -1.2
5,284,792 - IAI46_24755 0.77 -1.4
5,284,792 - IAI46_24755 0.77 -0.9
5,284,799 + IAI46_24755 0.78 -0.4
5,284,799 + IAI46_24755 0.78 -0.7
5,284,799 + IAI46_24755 0.78 -1.2
5,284,799 + IAI46_24755 0.78 -1.6
5,284,800 - IAI46_24755 0.78 -0.4
5,284,801 + IAI46_24755 0.78 -1.4
5,284,801 + IAI46_24755 0.78 -1.6
5,284,802 - IAI46_24755 0.78 -0.6
5,284,802 - IAI46_24755 0.78 -0.0
5,284,802 - IAI46_24755 0.78 -0.0
5,284,804 - IAI46_24755 0.78 -1.1
5,284,813 + IAI46_24755 0.79 +0.6
5,284,813 + IAI46_24755 0.79 -0.4
5,284,872 + IAI46_24755 0.84 -0.6
5,284,883 + IAI46_24755 0.85 -1.0
5,284,883 + IAI46_24755 0.85 -0.2
5,284,883 + IAI46_24755 0.85 -2.1
5,284,884 - IAI46_24755 0.85 -0.6
5,284,884 - IAI46_24755 0.85 -2.1
5,284,894 - IAI46_24755 0.86 -0.9
5,284,908 + IAI46_24755 0.87 -1.4
5,284,962 - -1.2
5,284,980 + -0.4
5,284,981 - +0.6
5,284,987 + -0.6
5,284,988 - +0.6
5,284,999 + -0.4
5,285,069 + -0.1
5,285,070 - +0.6
5,285,276 + IAI46_24760 0.20 -2.6
5,285,277 - IAI46_24760 0.20 -0.4
5,285,277 - IAI46_24760 0.20 -0.2
5,285,343 + IAI46_24760 0.27 -0.9
5,285,441 + IAI46_24760 0.37 +0.3
5,285,509 - IAI46_24760 0.44 -0.9
5,285,549 - IAI46_24760 0.48 +0.3
5,285,586 + IAI46_24760 0.52 -0.4
5,285,706 + IAI46_24760 0.64 -0.4
5,285,706 + IAI46_24760 0.64 -0.4
5,285,707 - IAI46_24760 0.64 -0.4
5,285,707 - IAI46_24760 0.64 -0.7
5,285,721 - IAI46_24760 0.66 -1.0
5,285,760 - IAI46_24760 0.70 -1.0
5,285,899 - IAI46_24760 0.84 -0.6
5,285,905 - IAI46_24760 0.84 +0.3
5,285,908 - IAI46_24760 0.85 +0.6
5,285,908 - IAI46_24760 0.85 +0.6
5,285,908 - IAI46_24760 0.85 -2.1
5,285,908 - IAI46_24760 0.85 +0.3
5,285,908 - IAI46_24760 0.85 +0.3
5,285,908 - IAI46_24760 0.85 +0.6
5,285,914 - IAI46_24760 0.85 -0.0
5,285,914 - IAI46_24760 0.85 -1.6
5,285,929 + IAI46_24760 0.87 +0.3
5,285,930 - IAI46_24760 0.87 -1.3
5,285,933 + IAI46_24760 0.87 -0.0
5,285,933 + IAI46_24760 0.87 -1.1
5,285,933 + IAI46_24760 0.87 -2.1
5,285,934 - IAI46_24760 0.87 -0.7
5,285,934 - IAI46_24760 0.87 -0.4
5,286,070 - +0.9

Or see this region's nucleotide sequence