Strain Fitness in Serratia liquefaciens MT49 around IAI46_24555

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24545 and IAI46_24550 are separated by 77 nucleotidesIAI46_24550 and IAI46_24555 are separated by 199 nucleotidesIAI46_24555 and IAI46_24560 are separated by 288 nucleotides IAI46_24545: IAI46_24545 - met regulon transcriptional regulator MetJ, at 5,242,786 to 5,243,103 _24545 IAI46_24550: IAI46_24550 - 50S ribosomal protein L31, at 5,243,181 to 5,243,396 _24550 IAI46_24555: IAI46_24555 - primosomal protein N', at 5,243,596 to 5,245,791 _24555 IAI46_24560: IAI46_24560 - DNA-binding transcriptional regulator CytR, at 5,246,080 to 5,247,108 _24560 Position (kb) 5243 5244 5245 5246Strain fitness (log2 ratio) -2 -1 0 1at 5242.603 kb on - strandat 5242.603 kb on - strandat 5242.623 kb on + strandat 5242.624 kb on - strandat 5242.624 kb on - strandat 5242.657 kb on - strandat 5242.690 kb on + strandat 5242.692 kb on + strandat 5242.692 kb on + strandat 5242.693 kb on - strandat 5242.703 kb on + strandat 5242.703 kb on + strandat 5242.703 kb on + strandat 5242.703 kb on + strandat 5242.732 kb on + strandat 5242.732 kb on + strandat 5242.776 kb on - strandat 5242.807 kb on + strandat 5242.807 kb on + strandat 5242.807 kb on + strandat 5242.808 kb on - strandat 5242.808 kb on - strandat 5242.865 kb on + strand, within IAI46_24545at 5243.101 kb on + strandat 5243.101 kb on + strandat 5243.128 kb on + strandat 5243.128 kb on + strandat 5243.128 kb on + strandat 5243.129 kb on - strandat 5243.129 kb on - strandat 5243.537 kb on + strandat 5243.537 kb on + strandat 5243.537 kb on + strandat 5245.832 kb on + strandat 5245.893 kb on + strandat 5245.893 kb on + strandat 5245.894 kb on - strandat 5245.894 kb on - strandat 5245.894 kb on - strandat 5245.894 kb on - strandat 5245.897 kb on + strandat 5245.898 kb on - strandat 5245.913 kb on + strandat 5245.913 kb on + strandat 5245.913 kb on + strandat 5245.913 kb on + strandat 5245.913 kb on + strandat 5245.914 kb on - strandat 5245.922 kb on + strandat 5245.922 kb on + strandat 5245.999 kb on + strandat 5245.999 kb on + strandat 5245.999 kb on + strandat 5246.000 kb on - strandat 5246.000 kb on - strandat 5246.041 kb on + strandat 5246.041 kb on + strandat 5246.099 kb on + strandat 5246.231 kb on + strand, within IAI46_24560at 5246.231 kb on + strand, within IAI46_24560at 5246.232 kb on - strand, within IAI46_24560at 5246.237 kb on - strand, within IAI46_24560at 5246.237 kb on - strand, within IAI46_24560at 5246.436 kb on + strand, within IAI46_24560at 5246.571 kb on - strand, within IAI46_24560at 5246.612 kb on - strand, within IAI46_24560at 5246.615 kb on + strand, within IAI46_24560at 5246.616 kb on - strand, within IAI46_24560at 5246.616 kb on - strand, within IAI46_24560at 5246.616 kb on - strand, within IAI46_24560at 5246.715 kb on + strand, within IAI46_24560at 5246.724 kb on + strand, within IAI46_24560at 5246.740 kb on + strand, within IAI46_24560at 5246.740 kb on + strand, within IAI46_24560at 5246.740 kb on + strand, within IAI46_24560at 5246.740 kb on + strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.741 kb on - strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.742 kb on + strand, within IAI46_24560at 5246.743 kb on - strand, within IAI46_24560at 5246.743 kb on - strand, within IAI46_24560at 5246.743 kb on - strand, within IAI46_24560at 5246.746 kb on - strand, within IAI46_24560at 5246.764 kb on + strand, within IAI46_24560at 5246.764 kb on + strand, within IAI46_24560at 5246.764 kb on + strand, within IAI46_24560at 5246.765 kb on - strand, within IAI46_24560

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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5,242,603 - -0.2
5,242,603 - +0.7
5,242,623 + -0.0
5,242,624 - +0.2
5,242,624 - +0.2
5,242,657 - -0.3
5,242,690 + -1.0
5,242,692 + +0.4
5,242,692 + +0.3
5,242,693 - +0.7
5,242,703 + -0.3
5,242,703 + +0.4
5,242,703 + +0.0
5,242,703 + -0.2
5,242,732 + +0.3
5,242,732 + -0.2
5,242,776 - +0.7
5,242,807 + +0.4
5,242,807 + -0.0
5,242,807 + -0.3
5,242,808 - -0.1
5,242,808 - -0.8
5,242,865 + IAI46_24545 0.25 +0.3
5,243,101 + +0.2
5,243,101 + -0.1
5,243,128 + +0.4
5,243,128 + -0.1
5,243,128 + +0.8
5,243,129 - +0.5
5,243,129 - -0.5
5,243,537 + +0.6
5,243,537 + +0.1
5,243,537 + +0.4
5,245,832 + -0.7
5,245,893 + -0.5
5,245,893 + -0.6
5,245,894 - +0.1
5,245,894 - +0.2
5,245,894 - +0.4
5,245,894 - +0.4
5,245,897 + -0.3
5,245,898 - +0.4
5,245,913 + +1.6
5,245,913 + +0.2
5,245,913 + +0.3
5,245,913 + -1.1
5,245,913 + -2.0
5,245,914 - -0.7
5,245,922 + +0.5
5,245,922 + +0.3
5,245,999 + -0.1
5,245,999 + +0.1
5,245,999 + +0.7
5,246,000 - -0.0
5,246,000 - +0.3
5,246,041 + +1.2
5,246,041 + +0.1
5,246,099 + -0.6
5,246,231 + IAI46_24560 0.15 -2.3
5,246,231 + IAI46_24560 0.15 +0.5
5,246,232 - IAI46_24560 0.15 +0.3
5,246,237 - IAI46_24560 0.15 +1.3
5,246,237 - IAI46_24560 0.15 +0.1
5,246,436 + IAI46_24560 0.35 +0.9
5,246,571 - IAI46_24560 0.48 +0.2
5,246,612 - IAI46_24560 0.52 +0.6
5,246,615 + IAI46_24560 0.52 -0.3
5,246,616 - IAI46_24560 0.52 +0.6
5,246,616 - IAI46_24560 0.52 -0.6
5,246,616 - IAI46_24560 0.52 +0.7
5,246,715 + IAI46_24560 0.62 -0.1
5,246,724 + IAI46_24560 0.63 -1.8
5,246,740 + IAI46_24560 0.64 -0.4
5,246,740 + IAI46_24560 0.64 +0.2
5,246,740 + IAI46_24560 0.64 -0.4
5,246,740 + IAI46_24560 0.64 -0.2
5,246,741 - IAI46_24560 0.64 +1.1
5,246,741 - IAI46_24560 0.64 -0.6
5,246,741 - IAI46_24560 0.64 -0.3
5,246,741 - IAI46_24560 0.64 -0.9
5,246,741 - IAI46_24560 0.64 +0.7
5,246,741 - IAI46_24560 0.64 -0.4
5,246,742 + IAI46_24560 0.64 +0.8
5,246,742 + IAI46_24560 0.64 +0.5
5,246,742 + IAI46_24560 0.64 -0.0
5,246,742 + IAI46_24560 0.64 +0.9
5,246,742 + IAI46_24560 0.64 +0.9
5,246,743 - IAI46_24560 0.64 -0.4
5,246,743 - IAI46_24560 0.64 +1.4
5,246,743 - IAI46_24560 0.64 +0.7
5,246,746 - IAI46_24560 0.65 -0.4
5,246,764 + IAI46_24560 0.66 +0.7
5,246,764 + IAI46_24560 0.66 +1.6
5,246,764 + IAI46_24560 0.66 +0.3
5,246,765 - IAI46_24560 0.67 +1.0

Or see this region's nucleotide sequence