Strain Fitness in Serratia liquefaciens MT49 around IAI46_24080

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24070 and IAI46_24075 are separated by 49 nucleotidesIAI46_24075 and IAI46_24080 are separated by 11 nucleotidesIAI46_24080 and IAI46_24085 are separated by 14 nucleotides IAI46_24070: IAI46_24070 - fimbria/pilus outer membrane usher protein, at 5,126,418 to 5,128,919 _24070 IAI46_24075: IAI46_24075 - fimbria/pilus periplasmic chaperone, at 5,128,969 to 5,129,694 _24075 IAI46_24080: IAI46_24080 - type 1 fimbrial protein, at 5,129,706 to 5,130,320 _24080 IAI46_24085: IAI46_24085 - fimbrial protein, at 5,130,335 to 5,131,339 _24085 Position (kb) 5129 5130 5131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5128.791 kb on + strandat 5128.792 kb on - strandat 5128.792 kb on - strandat 5128.862 kb on + strandat 5128.894 kb on + strandat 5128.917 kb on + strandat 5128.918 kb on - strandat 5128.944 kb on + strandat 5128.944 kb on + strandat 5128.944 kb on + strandat 5128.944 kb on + strandat 5128.944 kb on + strandat 5128.944 kb on + strandat 5129.038 kb on - strandat 5129.050 kb on + strand, within IAI46_24075at 5129.082 kb on + strand, within IAI46_24075at 5129.276 kb on - strand, within IAI46_24075at 5129.464 kb on + strand, within IAI46_24075at 5129.465 kb on - strand, within IAI46_24075at 5129.465 kb on - strand, within IAI46_24075at 5129.569 kb on - strand, within IAI46_24075at 5129.608 kb on + strand, within IAI46_24075at 5129.608 kb on + strand, within IAI46_24075at 5129.608 kb on + strand, within IAI46_24075at 5129.608 kb on + strand, within IAI46_24075at 5129.608 kb on + strand, within IAI46_24075at 5129.608 kb on + strand, within IAI46_24075at 5129.608 kb on + strand, within IAI46_24075at 5129.608 kb on + strand, within IAI46_24075at 5129.609 kb on - strand, within IAI46_24075at 5129.609 kb on - strand, within IAI46_24075at 5129.609 kb on - strand, within IAI46_24075at 5129.609 kb on - strand, within IAI46_24075at 5129.609 kb on - strand, within IAI46_24075at 5129.610 kb on + strand, within IAI46_24075at 5129.610 kb on + strand, within IAI46_24075at 5129.610 kb on + strand, within IAI46_24075at 5129.611 kb on - strand, within IAI46_24075at 5129.621 kb on - strand, within IAI46_24075at 5129.621 kb on - strand, within IAI46_24075at 5129.692 kb on + strandat 5129.693 kb on - strandat 5130.042 kb on + strand, within IAI46_24080at 5130.043 kb on - strand, within IAI46_24080at 5130.201 kb on + strand, within IAI46_24080at 5130.202 kb on - strand, within IAI46_24080at 5130.224 kb on + strand, within IAI46_24080at 5130.224 kb on + strand, within IAI46_24080at 5130.224 kb on + strand, within IAI46_24080at 5130.224 kb on + strand, within IAI46_24080at 5130.225 kb on - strand, within IAI46_24080at 5130.312 kb on + strandat 5130.313 kb on - strandat 5130.313 kb on - strandat 5130.347 kb on + strandat 5130.352 kb on + strandat 5130.352 kb on + strandat 5130.353 kb on - strandat 5130.410 kb on + strandat 5130.411 kb on - strandat 5130.411 kb on - strandat 5130.443 kb on + strand, within IAI46_24085at 5130.443 kb on + strand, within IAI46_24085at 5130.443 kb on + strand, within IAI46_24085at 5130.466 kb on + strand, within IAI46_24085at 5130.466 kb on + strand, within IAI46_24085at 5130.466 kb on + strand, within IAI46_24085at 5130.521 kb on + strand, within IAI46_24085at 5130.522 kb on - strand, within IAI46_24085at 5130.522 kb on - strand, within IAI46_24085at 5130.523 kb on + strand, within IAI46_24085at 5130.524 kb on - strand, within IAI46_24085at 5130.536 kb on + strand, within IAI46_24085at 5130.536 kb on + strand, within IAI46_24085at 5130.536 kb on + strand, within IAI46_24085at 5130.536 kb on + strand, within IAI46_24085at 5130.537 kb on - strand, within IAI46_24085at 5130.537 kb on - strand, within IAI46_24085at 5130.537 kb on - strand, within IAI46_24085at 5130.559 kb on + strand, within IAI46_24085at 5130.572 kb on + strand, within IAI46_24085at 5130.572 kb on + strand, within IAI46_24085at 5130.573 kb on - strand, within IAI46_24085at 5130.573 kb on - strand, within IAI46_24085at 5130.635 kb on + strand, within IAI46_24085at 5130.635 kb on + strand, within IAI46_24085at 5130.636 kb on - strand, within IAI46_24085at 5130.636 kb on - strand, within IAI46_24085at 5130.636 kb on - strand, within IAI46_24085at 5130.645 kb on + strand, within IAI46_24085at 5130.646 kb on - strand, within IAI46_24085at 5130.673 kb on + strand, within IAI46_24085at 5130.683 kb on + strand, within IAI46_24085at 5130.684 kb on - strand, within IAI46_24085at 5130.684 kb on - strand, within IAI46_24085at 5130.701 kb on + strand, within IAI46_24085at 5130.702 kb on - strand, within IAI46_24085at 5130.719 kb on + strand, within IAI46_24085at 5130.720 kb on - strand, within IAI46_24085at 5130.746 kb on + strand, within IAI46_24085at 5130.747 kb on - strand, within IAI46_24085at 5130.747 kb on - strand, within IAI46_24085at 5130.760 kb on + strand, within IAI46_24085at 5130.764 kb on + strand, within IAI46_24085at 5130.764 kb on + strand, within IAI46_24085at 5130.765 kb on - strand, within IAI46_24085at 5130.765 kb on - strand, within IAI46_24085at 5130.814 kb on + strand, within IAI46_24085at 5130.815 kb on - strand, within IAI46_24085at 5130.857 kb on + strand, within IAI46_24085at 5130.857 kb on + strand, within IAI46_24085at 5130.935 kb on + strand, within IAI46_24085at 5130.936 kb on - strand, within IAI46_24085at 5130.947 kb on - strand, within IAI46_24085at 5131.026 kb on - strand, within IAI46_24085at 5131.037 kb on - strand, within IAI46_24085at 5131.142 kb on - strand, within IAI46_24085at 5131.142 kb on - strand, within IAI46_24085at 5131.151 kb on - strand, within IAI46_24085at 5131.181 kb on - strand, within IAI46_24085at 5131.280 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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5,128,791 + +0.3
5,128,792 - +0.4
5,128,792 - +1.3
5,128,862 + -0.5
5,128,894 + -0.7
5,128,917 + +0.9
5,128,918 - -0.2
5,128,944 + +1.8
5,128,944 + +0.2
5,128,944 + -2.9
5,128,944 + +0.3
5,128,944 + +0.2
5,128,944 + +0.2
5,129,038 - -0.5
5,129,050 + IAI46_24075 0.11 +1.7
5,129,082 + IAI46_24075 0.16 -0.7
5,129,276 - IAI46_24075 0.42 -1.1
5,129,464 + IAI46_24075 0.68 +0.4
5,129,465 - IAI46_24075 0.68 -0.0
5,129,465 - IAI46_24075 0.68 +0.4
5,129,569 - IAI46_24075 0.83 +1.5
5,129,608 + IAI46_24075 0.88 -0.6
5,129,608 + IAI46_24075 0.88 +0.1
5,129,608 + IAI46_24075 0.88 +0.4
5,129,608 + IAI46_24075 0.88 -0.3
5,129,608 + IAI46_24075 0.88 +0.9
5,129,608 + IAI46_24075 0.88 -0.1
5,129,608 + IAI46_24075 0.88 +2.2
5,129,608 + IAI46_24075 0.88 +0.5
5,129,609 - IAI46_24075 0.88 +0.6
5,129,609 - IAI46_24075 0.88 -0.2
5,129,609 - IAI46_24075 0.88 +0.1
5,129,609 - IAI46_24075 0.88 +0.3
5,129,609 - IAI46_24075 0.88 -0.1
5,129,610 + IAI46_24075 0.88 +0.5
5,129,610 + IAI46_24075 0.88 -0.1
5,129,610 + IAI46_24075 0.88 +0.5
5,129,611 - IAI46_24075 0.88 -0.1
5,129,621 - IAI46_24075 0.90 +1.1
5,129,621 - IAI46_24075 0.90 -0.4
5,129,692 + +0.4
5,129,693 - +0.8
5,130,042 + IAI46_24080 0.55 +1.4
5,130,043 - IAI46_24080 0.55 -0.4
5,130,201 + IAI46_24080 0.80 +0.4
5,130,202 - IAI46_24080 0.81 -0.0
5,130,224 + IAI46_24080 0.84 +0.4
5,130,224 + IAI46_24080 0.84 +0.3
5,130,224 + IAI46_24080 0.84 +0.5
5,130,224 + IAI46_24080 0.84 -0.1
5,130,225 - IAI46_24080 0.84 +0.4
5,130,312 + +1.0
5,130,313 - +0.4
5,130,313 - -1.2
5,130,347 + +0.3
5,130,352 + -0.0
5,130,352 + -0.3
5,130,353 - +0.1
5,130,410 + +0.4
5,130,411 - -1.4
5,130,411 - -0.1
5,130,443 + IAI46_24085 0.11 +0.1
5,130,443 + IAI46_24085 0.11 -0.3
5,130,443 + IAI46_24085 0.11 -1.0
5,130,466 + IAI46_24085 0.13 +0.5
5,130,466 + IAI46_24085 0.13 +1.3
5,130,466 + IAI46_24085 0.13 +1.1
5,130,521 + IAI46_24085 0.19 -0.0
5,130,522 - IAI46_24085 0.19 -0.3
5,130,522 - IAI46_24085 0.19 -0.7
5,130,523 + IAI46_24085 0.19 +0.2
5,130,524 - IAI46_24085 0.19 +1.0
5,130,536 + IAI46_24085 0.20 +0.2
5,130,536 + IAI46_24085 0.20 +0.3
5,130,536 + IAI46_24085 0.20 +1.3
5,130,536 + IAI46_24085 0.20 -1.1
5,130,537 - IAI46_24085 0.20 +0.3
5,130,537 - IAI46_24085 0.20 +0.4
5,130,537 - IAI46_24085 0.20 +0.4
5,130,559 + IAI46_24085 0.22 +0.2
5,130,572 + IAI46_24085 0.24 -1.9
5,130,572 + IAI46_24085 0.24 +0.3
5,130,573 - IAI46_24085 0.24 -0.4
5,130,573 - IAI46_24085 0.24 +0.1
5,130,635 + IAI46_24085 0.30 +0.3
5,130,635 + IAI46_24085 0.30 +0.2
5,130,636 - IAI46_24085 0.30 -0.1
5,130,636 - IAI46_24085 0.30 -0.4
5,130,636 - IAI46_24085 0.30 -0.4
5,130,645 + IAI46_24085 0.31 -0.3
5,130,646 - IAI46_24085 0.31 +0.2
5,130,673 + IAI46_24085 0.34 +0.4
5,130,683 + IAI46_24085 0.35 -0.1
5,130,684 - IAI46_24085 0.35 -0.0
5,130,684 - IAI46_24085 0.35 -0.7
5,130,701 + IAI46_24085 0.36 -0.4
5,130,702 - IAI46_24085 0.37 -0.3
5,130,719 + IAI46_24085 0.38 +0.6
5,130,720 - IAI46_24085 0.38 -0.1
5,130,746 + IAI46_24085 0.41 +0.5
5,130,747 - IAI46_24085 0.41 +0.7
5,130,747 - IAI46_24085 0.41 -0.0
5,130,760 + IAI46_24085 0.42 +0.9
5,130,764 + IAI46_24085 0.43 -0.9
5,130,764 + IAI46_24085 0.43 +0.5
5,130,765 - IAI46_24085 0.43 +1.5
5,130,765 - IAI46_24085 0.43 +0.0
5,130,814 + IAI46_24085 0.48 -0.2
5,130,815 - IAI46_24085 0.48 -0.2
5,130,857 + IAI46_24085 0.52 +0.3
5,130,857 + IAI46_24085 0.52 -0.3
5,130,935 + IAI46_24085 0.60 -0.3
5,130,936 - IAI46_24085 0.60 -0.9
5,130,947 - IAI46_24085 0.61 -0.6
5,131,026 - IAI46_24085 0.69 -0.0
5,131,037 - IAI46_24085 0.70 -0.0
5,131,142 - IAI46_24085 0.80 -0.3
5,131,142 - IAI46_24085 0.80 +0.4
5,131,151 - IAI46_24085 0.81 -0.6
5,131,181 - IAI46_24085 0.84 +1.2
5,131,280 - +0.1

Or see this region's nucleotide sequence