Strain Fitness in Serratia liquefaciens MT49 around IAI46_20480

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20475 and IAI46_20480 are separated by 33 nucleotidesIAI46_20480 and IAI46_20485 overlap by 1 nucleotides IAI46_20475: IAI46_20475 - NADP(H)-dependent aldo-keto reductase, at 4,330,287 to 4,331,327 _20475 IAI46_20480: IAI46_20480 - lysophospholipid transporter LplT, at 4,331,361 to 4,332,557 _20480 IAI46_20485: IAI46_20485 - bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase, at 4,332,557 to 4,334,710 _20485 Position (kb) 4331 4332 4333Strain fitness (log2 ratio) -1 0 1 2at 4330.398 kb on + strand, within IAI46_20475at 4330.443 kb on + strand, within IAI46_20475at 4330.671 kb on + strand, within IAI46_20475at 4330.713 kb on - strand, within IAI46_20475at 4330.722 kb on + strand, within IAI46_20475at 4330.723 kb on - strand, within IAI46_20475at 4330.728 kb on + strand, within IAI46_20475at 4330.728 kb on + strand, within IAI46_20475at 4330.729 kb on - strand, within IAI46_20475at 4330.809 kb on + strand, within IAI46_20475at 4330.811 kb on + strand, within IAI46_20475at 4330.852 kb on - strand, within IAI46_20475at 4330.909 kb on - strand, within IAI46_20475at 4330.918 kb on + strand, within IAI46_20475at 4330.979 kb on - strand, within IAI46_20475at 4330.983 kb on + strand, within IAI46_20475at 4330.984 kb on - strand, within IAI46_20475at 4331.020 kb on - strand, within IAI46_20475at 4331.054 kb on + strand, within IAI46_20475at 4331.055 kb on - strand, within IAI46_20475at 4331.055 kb on - strand, within IAI46_20475at 4331.063 kb on + strand, within IAI46_20475at 4331.072 kb on + strand, within IAI46_20475at 4331.072 kb on + strand, within IAI46_20475at 4331.072 kb on + strand, within IAI46_20475at 4331.115 kb on + strand, within IAI46_20475at 4331.115 kb on + strand, within IAI46_20475at 4331.116 kb on - strand, within IAI46_20475at 4331.116 kb on - strand, within IAI46_20475at 4331.198 kb on + strand, within IAI46_20475at 4331.199 kb on - strand, within IAI46_20475at 4331.329 kb on + strandat 4331.330 kb on - strandat 4331.632 kb on + strand, within IAI46_20480at 4331.640 kb on - strand, within IAI46_20480at 4331.649 kb on - strand, within IAI46_20480at 4331.703 kb on - strand, within IAI46_20480at 4331.885 kb on + strand, within IAI46_20480at 4331.885 kb on + strand, within IAI46_20480at 4332.008 kb on + strand, within IAI46_20480at 4332.009 kb on - strand, within IAI46_20480at 4332.009 kb on - strand, within IAI46_20480at 4332.009 kb on - strand, within IAI46_20480at 4332.051 kb on + strand, within IAI46_20480at 4332.051 kb on + strand, within IAI46_20480at 4332.126 kb on - strand, within IAI46_20480at 4332.197 kb on - strand, within IAI46_20480at 4332.211 kb on + strand, within IAI46_20480at 4332.211 kb on + strand, within IAI46_20480at 4332.211 kb on + strand, within IAI46_20480at 4332.212 kb on - strand, within IAI46_20480at 4332.239 kb on + strand, within IAI46_20480at 4332.240 kb on - strand, within IAI46_20480at 4332.373 kb on + strand, within IAI46_20480at 4332.373 kb on + strand, within IAI46_20480at 4332.373 kb on + strand, within IAI46_20480at 4332.373 kb on + strand, within IAI46_20480at 4332.374 kb on - strand, within IAI46_20480at 4332.374 kb on - strand, within IAI46_20480at 4332.374 kb on - strand, within IAI46_20480at 4332.374 kb on - strand, within IAI46_20480at 4332.374 kb on - strand, within IAI46_20480at 4332.374 kb on - strand, within IAI46_20480at 4332.421 kb on + strand, within IAI46_20480at 4332.586 kb on + strandat 4332.650 kb on - strandat 4332.757 kb on + strandat 4332.757 kb on + strandat 4332.758 kb on - strandat 4332.804 kb on - strand, within IAI46_20485at 4332.894 kb on + strand, within IAI46_20485at 4332.920 kb on - strand, within IAI46_20485at 4332.934 kb on - strand, within IAI46_20485at 4332.934 kb on - strand, within IAI46_20485at 4333.079 kb on + strand, within IAI46_20485at 4333.094 kb on - strand, within IAI46_20485at 4333.180 kb on - strand, within IAI46_20485at 4333.203 kb on + strand, within IAI46_20485at 4333.204 kb on - strand, within IAI46_20485at 4333.204 kb on - strand, within IAI46_20485at 4333.264 kb on - strand, within IAI46_20485at 4333.264 kb on - strand, within IAI46_20485at 4333.284 kb on + strand, within IAI46_20485at 4333.285 kb on - strand, within IAI46_20485at 4333.305 kb on + strand, within IAI46_20485at 4333.305 kb on + strand, within IAI46_20485at 4333.305 kb on + strand, within IAI46_20485at 4333.305 kb on + strand, within IAI46_20485at 4333.305 kb on + strand, within IAI46_20485at 4333.305 kb on + strand, within IAI46_20485at 4333.305 kb on + strand, within IAI46_20485at 4333.306 kb on - strand, within IAI46_20485at 4333.306 kb on - strand, within IAI46_20485at 4333.306 kb on - strand, within IAI46_20485at 4333.309 kb on + strand, within IAI46_20485at 4333.309 kb on + strand, within IAI46_20485at 4333.309 kb on + strand, within IAI46_20485at 4333.310 kb on - strand, within IAI46_20485at 4333.310 kb on - strand, within IAI46_20485at 4333.337 kb on + strand, within IAI46_20485at 4333.338 kb on - strand, within IAI46_20485at 4333.338 kb on - strand, within IAI46_20485at 4333.348 kb on + strand, within IAI46_20485at 4333.348 kb on + strand, within IAI46_20485at 4333.349 kb on - strand, within IAI46_20485at 4333.356 kb on + strand, within IAI46_20485at 4333.356 kb on + strand, within IAI46_20485at 4333.356 kb on + strand, within IAI46_20485at 4333.356 kb on + strand, within IAI46_20485at 4333.356 kb on + strand, within IAI46_20485at 4333.357 kb on - strand, within IAI46_20485at 4333.357 kb on - strand, within IAI46_20485at 4333.357 kb on - strand, within IAI46_20485at 4333.483 kb on + strand, within IAI46_20485at 4333.483 kb on + strand, within IAI46_20485at 4333.484 kb on - strand, within IAI46_20485at 4333.517 kb on - strand, within IAI46_20485

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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4,330,398 + IAI46_20475 0.11 +0.4
4,330,443 + IAI46_20475 0.15 -0.4
4,330,671 + IAI46_20475 0.37 +0.2
4,330,713 - IAI46_20475 0.41 +0.6
4,330,722 + IAI46_20475 0.42 -0.3
4,330,723 - IAI46_20475 0.42 +1.3
4,330,728 + IAI46_20475 0.42 -0.6
4,330,728 + IAI46_20475 0.42 +0.0
4,330,729 - IAI46_20475 0.42 +0.5
4,330,809 + IAI46_20475 0.50 -0.9
4,330,811 + IAI46_20475 0.50 -0.3
4,330,852 - IAI46_20475 0.54 -0.3
4,330,909 - IAI46_20475 0.60 +0.1
4,330,918 + IAI46_20475 0.61 +0.7
4,330,979 - IAI46_20475 0.66 +0.9
4,330,983 + IAI46_20475 0.67 +0.5
4,330,984 - IAI46_20475 0.67 -0.2
4,331,020 - IAI46_20475 0.70 -0.9
4,331,054 + IAI46_20475 0.74 +0.4
4,331,055 - IAI46_20475 0.74 +0.6
4,331,055 - IAI46_20475 0.74 +0.5
4,331,063 + IAI46_20475 0.75 +0.8
4,331,072 + IAI46_20475 0.75 +0.1
4,331,072 + IAI46_20475 0.75 -0.6
4,331,072 + IAI46_20475 0.75 -0.8
4,331,115 + IAI46_20475 0.80 -1.4
4,331,115 + IAI46_20475 0.80 +0.5
4,331,116 - IAI46_20475 0.80 +0.1
4,331,116 - IAI46_20475 0.80 -1.3
4,331,198 + IAI46_20475 0.88 -0.0
4,331,199 - IAI46_20475 0.88 +0.0
4,331,329 + -1.1
4,331,330 - +0.6
4,331,632 + IAI46_20480 0.23 +0.4
4,331,640 - IAI46_20480 0.23 -0.2
4,331,649 - IAI46_20480 0.24 +0.9
4,331,703 - IAI46_20480 0.29 -0.2
4,331,885 + IAI46_20480 0.44 +0.0
4,331,885 + IAI46_20480 0.44 -0.5
4,332,008 + IAI46_20480 0.54 -0.1
4,332,009 - IAI46_20480 0.54 -0.1
4,332,009 - IAI46_20480 0.54 +0.6
4,332,009 - IAI46_20480 0.54 -0.3
4,332,051 + IAI46_20480 0.58 -0.0
4,332,051 + IAI46_20480 0.58 +0.2
4,332,126 - IAI46_20480 0.64 -1.6
4,332,197 - IAI46_20480 0.70 -0.3
4,332,211 + IAI46_20480 0.71 -0.7
4,332,211 + IAI46_20480 0.71 -0.4
4,332,211 + IAI46_20480 0.71 -0.7
4,332,212 - IAI46_20480 0.71 -0.1
4,332,239 + IAI46_20480 0.73 +0.4
4,332,240 - IAI46_20480 0.73 +0.2
4,332,373 + IAI46_20480 0.85 -0.2
4,332,373 + IAI46_20480 0.85 +0.2
4,332,373 + IAI46_20480 0.85 +1.3
4,332,373 + IAI46_20480 0.85 +0.8
4,332,374 - IAI46_20480 0.85 -0.4
4,332,374 - IAI46_20480 0.85 +0.3
4,332,374 - IAI46_20480 0.85 -0.2
4,332,374 - IAI46_20480 0.85 +1.3
4,332,374 - IAI46_20480 0.85 +0.2
4,332,374 - IAI46_20480 0.85 +0.7
4,332,421 + IAI46_20480 0.89 +0.0
4,332,586 + -0.4
4,332,650 - -0.2
4,332,757 + +0.0
4,332,757 + +1.2
4,332,758 - +0.1
4,332,804 - IAI46_20485 0.11 +0.4
4,332,894 + IAI46_20485 0.16 +0.0
4,332,920 - IAI46_20485 0.17 +0.0
4,332,934 - IAI46_20485 0.18 +0.5
4,332,934 - IAI46_20485 0.18 +0.2
4,333,079 + IAI46_20485 0.24 -0.7
4,333,094 - IAI46_20485 0.25 +0.3
4,333,180 - IAI46_20485 0.29 -0.8
4,333,203 + IAI46_20485 0.30 +0.5
4,333,204 - IAI46_20485 0.30 -0.1
4,333,204 - IAI46_20485 0.30 +0.1
4,333,264 - IAI46_20485 0.33 +0.7
4,333,264 - IAI46_20485 0.33 -1.0
4,333,284 + IAI46_20485 0.34 +0.1
4,333,285 - IAI46_20485 0.34 -0.3
4,333,305 + IAI46_20485 0.35 +0.6
4,333,305 + IAI46_20485 0.35 -0.7
4,333,305 + IAI46_20485 0.35 +0.6
4,333,305 + IAI46_20485 0.35 +1.4
4,333,305 + IAI46_20485 0.35 -0.6
4,333,305 + IAI46_20485 0.35 +0.6
4,333,305 + IAI46_20485 0.35 +0.0
4,333,306 - IAI46_20485 0.35 -0.4
4,333,306 - IAI46_20485 0.35 -0.3
4,333,306 - IAI46_20485 0.35 -0.1
4,333,309 + IAI46_20485 0.35 +0.7
4,333,309 + IAI46_20485 0.35 +1.8
4,333,309 + IAI46_20485 0.35 +0.3
4,333,310 - IAI46_20485 0.35 +0.9
4,333,310 - IAI46_20485 0.35 -0.0
4,333,337 + IAI46_20485 0.36 +1.0
4,333,338 - IAI46_20485 0.36 -0.1
4,333,338 - IAI46_20485 0.36 +0.2
4,333,348 + IAI46_20485 0.37 -0.3
4,333,348 + IAI46_20485 0.37 -0.6
4,333,349 - IAI46_20485 0.37 +0.1
4,333,356 + IAI46_20485 0.37 +0.7
4,333,356 + IAI46_20485 0.37 +1.8
4,333,356 + IAI46_20485 0.37 +0.2
4,333,356 + IAI46_20485 0.37 -1.0
4,333,356 + IAI46_20485 0.37 +0.3
4,333,357 - IAI46_20485 0.37 +1.3
4,333,357 - IAI46_20485 0.37 -0.2
4,333,357 - IAI46_20485 0.37 -0.8
4,333,483 + IAI46_20485 0.43 +0.3
4,333,483 + IAI46_20485 0.43 +0.4
4,333,484 - IAI46_20485 0.43 -0.1
4,333,517 - IAI46_20485 0.45 +0.7

Or see this region's nucleotide sequence