Strain Fitness in Serratia liquefaciens MT49 around IAI46_17675

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17660 and IAI46_17665 overlap by 4 nucleotidesIAI46_17665 and IAI46_17670 overlap by 4 nucleotidesIAI46_17670 and IAI46_17675 are separated by 13 nucleotidesIAI46_17675 and IAI46_17680 are separated by 14 nucleotidesIAI46_17680 and IAI46_17685 overlap by 4 nucleotides IAI46_17660: IAI46_17660 - NADH-quinone oxidoreductase subunit L, at 3,721,338 to 3,723,185 _17660 IAI46_17665: IAI46_17665 - NADH-quinone oxidoreductase subunit NuoK, at 3,723,182 to 3,723,484 _17665 IAI46_17670: IAI46_17670 - NADH-quinone oxidoreductase subunit J, at 3,723,481 to 3,724,041 _17670 IAI46_17675: IAI46_17675 - NADH-quinone oxidoreductase subunit NuoI, at 3,724,055 to 3,724,597 _17675 IAI46_17680: IAI46_17680 - NADH-quinone oxidoreductase subunit NuoH, at 3,724,612 to 3,725,589 _17680 IAI46_17685: IAI46_17685 - NADH-quinone oxidoreductase subunit NuoG, at 3,725,586 to 3,728,324 _17685 Position (kb) 3724 3725Strain fitness (log2 ratio) -1 0 1 2 3at 3723.165 kb on - strandat 3723.169 kb on - strandat 3723.169 kb on - strandat 3723.172 kb on + strandat 3723.206 kb on - strandat 3723.206 kb on - strandat 3723.212 kb on - strandat 3723.234 kb on + strand, within IAI46_17665at 3723.300 kb on + strand, within IAI46_17665at 3723.300 kb on + strand, within IAI46_17665at 3723.395 kb on - strand, within IAI46_17665at 3723.632 kb on + strand, within IAI46_17670at 3723.633 kb on - strand, within IAI46_17670at 3723.633 kb on - strand, within IAI46_17670at 3723.867 kb on - strand, within IAI46_17670at 3723.950 kb on + strand, within IAI46_17670at 3723.976 kb on - strand, within IAI46_17670at 3724.025 kb on + strandat 3724.154 kb on - strand, within IAI46_17675at 3724.264 kb on + strand, within IAI46_17675at 3724.264 kb on + strand, within IAI46_17675at 3724.415 kb on + strand, within IAI46_17675at 3724.415 kb on + strand, within IAI46_17675at 3724.501 kb on - strand, within IAI46_17675at 3724.538 kb on + strand, within IAI46_17675at 3724.539 kb on - strand, within IAI46_17675at 3724.539 kb on - strand, within IAI46_17675at 3724.580 kb on + strandat 3724.614 kb on - strandat 3724.700 kb on - strandat 3724.866 kb on - strand, within IAI46_17680at 3724.866 kb on - strand, within IAI46_17680at 3725.168 kb on + strand, within IAI46_17680at 3725.207 kb on + strand, within IAI46_17680at 3725.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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3,723,165 - +1.4
3,723,169 - +0.5
3,723,169 - -0.3
3,723,172 + +1.1
3,723,206 - +1.4
3,723,206 - +0.7
3,723,212 - -1.3
3,723,234 + IAI46_17665 0.17 +2.8
3,723,300 + IAI46_17665 0.39 +0.3
3,723,300 + IAI46_17665 0.39 +1.8
3,723,395 - IAI46_17665 0.70 +1.5
3,723,632 + IAI46_17670 0.27 -0.3
3,723,633 - IAI46_17670 0.27 -0.4
3,723,633 - IAI46_17670 0.27 +0.4
3,723,867 - IAI46_17670 0.69 +1.4
3,723,950 + IAI46_17670 0.84 +1.5
3,723,976 - IAI46_17670 0.88 +1.2
3,724,025 + +0.5
3,724,154 - IAI46_17675 0.18 -1.2
3,724,264 + IAI46_17675 0.38 -0.3
3,724,264 + IAI46_17675 0.38 +0.3
3,724,415 + IAI46_17675 0.66 +2.1
3,724,415 + IAI46_17675 0.66 +1.0
3,724,501 - IAI46_17675 0.82 +1.1
3,724,538 + IAI46_17675 0.89 -0.5
3,724,539 - IAI46_17675 0.89 +0.0
3,724,539 - IAI46_17675 0.89 +1.0
3,724,580 + -0.5
3,724,614 - +1.0
3,724,700 - +1.8
3,724,866 - IAI46_17680 0.26 -1.5
3,724,866 - IAI46_17680 0.26 +1.8
3,725,168 + IAI46_17680 0.57 +0.7
3,725,207 + IAI46_17680 0.61 +0.8
3,725,542 - +1.4

Or see this region's nucleotide sequence