Strain Fitness in Serratia liquefaciens MT49 around IAI46_15325

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15320 and IAI46_15325 are separated by 180 nucleotidesIAI46_15325 and IAI46_15330 overlap by 1 nucleotides IAI46_15320: IAI46_15320 - N-succinylarginine dihydrolase, at 3,205,271 to 3,206,611 _15320 IAI46_15325: IAI46_15325 - succinylglutamate-semialdehyde dehydrogenase, at 3,206,792 to 3,208,264 _15325 IAI46_15330: IAI46_15330 - arginine N-succinyltransferase, at 3,208,264 to 3,209,298 _15330 Position (kb) 3206 3207 3208 3209Strain fitness (log2 ratio) -1 0 1at 3205.806 kb on + strand, within IAI46_15320at 3205.832 kb on + strand, within IAI46_15320at 3205.833 kb on - strand, within IAI46_15320at 3205.915 kb on + strand, within IAI46_15320at 3205.915 kb on + strand, within IAI46_15320at 3205.915 kb on + strand, within IAI46_15320at 3205.916 kb on - strand, within IAI46_15320at 3205.916 kb on - strand, within IAI46_15320at 3206.056 kb on - strand, within IAI46_15320at 3206.559 kb on + strandat 3206.559 kb on + strandat 3206.560 kb on - strandat 3206.654 kb on + strandat 3206.654 kb on + strandat 3206.660 kb on - strandat 3206.706 kb on + strandat 3206.707 kb on - strandat 3206.707 kb on - strandat 3206.707 kb on - strandat 3206.720 kb on + strandat 3206.720 kb on + strandat 3206.721 kb on - strandat 3206.753 kb on + strandat 3206.890 kb on - strandat 3207.054 kb on + strand, within IAI46_15325at 3207.130 kb on - strand, within IAI46_15325at 3207.824 kb on - strand, within IAI46_15325at 3207.826 kb on - strand, within IAI46_15325at 3207.902 kb on + strand, within IAI46_15325at 3207.903 kb on - strand, within IAI46_15325at 3207.903 kb on - strand, within IAI46_15325at 3207.922 kb on - strand, within IAI46_15325at 3208.241 kb on - strandat 3208.243 kb on + strandat 3208.285 kb on - strandat 3208.407 kb on - strand, within IAI46_15330at 3208.465 kb on + strand, within IAI46_15330at 3208.465 kb on + strand, within IAI46_15330at 3208.466 kb on - strand, within IAI46_15330at 3208.661 kb on + strand, within IAI46_15330at 3208.661 kb on + strand, within IAI46_15330at 3208.661 kb on + strand, within IAI46_15330at 3208.662 kb on - strand, within IAI46_15330at 3208.662 kb on - strand, within IAI46_15330at 3208.721 kb on + strand, within IAI46_15330at 3208.908 kb on - strand, within IAI46_15330at 3208.929 kb on + strand, within IAI46_15330at 3208.930 kb on - strand, within IAI46_15330at 3208.988 kb on + strand, within IAI46_15330at 3209.126 kb on + strand, within IAI46_15330at 3209.197 kb on - strandat 3209.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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3,205,806 + IAI46_15320 0.40 -0.0
3,205,832 + IAI46_15320 0.42 +0.9
3,205,833 - IAI46_15320 0.42 -1.0
3,205,915 + IAI46_15320 0.48 -0.4
3,205,915 + IAI46_15320 0.48 +0.5
3,205,915 + IAI46_15320 0.48 +0.4
3,205,916 - IAI46_15320 0.48 -0.0
3,205,916 - IAI46_15320 0.48 +0.5
3,206,056 - IAI46_15320 0.59 -0.8
3,206,559 + -0.2
3,206,559 + +0.6
3,206,560 - +0.3
3,206,654 + +1.0
3,206,654 + -0.3
3,206,660 - -0.6
3,206,706 + -0.0
3,206,707 - +0.5
3,206,707 - +0.8
3,206,707 - +0.6
3,206,720 + -0.8
3,206,720 + -0.2
3,206,721 - +0.6
3,206,753 + -0.4
3,206,890 - +0.8
3,207,054 + IAI46_15325 0.18 +0.9
3,207,130 - IAI46_15325 0.23 +1.2
3,207,824 - IAI46_15325 0.70 -0.7
3,207,826 - IAI46_15325 0.70 -0.8
3,207,902 + IAI46_15325 0.75 +0.1
3,207,903 - IAI46_15325 0.75 +0.8
3,207,903 - IAI46_15325 0.75 +1.0
3,207,922 - IAI46_15325 0.77 +0.3
3,208,241 - -0.6
3,208,243 + -1.1
3,208,285 - -0.6
3,208,407 - IAI46_15330 0.14 -1.3
3,208,465 + IAI46_15330 0.19 -1.2
3,208,465 + IAI46_15330 0.19 +0.2
3,208,466 - IAI46_15330 0.20 -1.0
3,208,661 + IAI46_15330 0.38 +0.6
3,208,661 + IAI46_15330 0.38 +0.8
3,208,661 + IAI46_15330 0.38 +0.9
3,208,662 - IAI46_15330 0.38 -0.5
3,208,662 - IAI46_15330 0.38 -0.5
3,208,721 + IAI46_15330 0.44 -1.0
3,208,908 - IAI46_15330 0.62 +0.2
3,208,929 + IAI46_15330 0.64 +0.3
3,208,930 - IAI46_15330 0.64 +0.6
3,208,988 + IAI46_15330 0.70 +1.2
3,209,126 + IAI46_15330 0.83 -1.0
3,209,197 - +0.7
3,209,197 - +0.1

Or see this region's nucleotide sequence