Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_14710 and IAI46_14715 are separated by 22 nucleotides IAI46_14715 and IAI46_14720 are separated by 9 nucleotides IAI46_14720 and IAI46_14725 are separated by 345 nucleotides
IAI46_14710: IAI46_14710 - Gfo/Idh/MocA family oxidoreductase, at 3,117,214 to 3,118,104
_14710
IAI46_14715: IAI46_14715 - YceH family protein, at 3,118,127 to 3,118,771
_14715
IAI46_14720: IAI46_14720 - ribosomal protein S5-alanine N-acetyltransferase, at 3,118,781 to 3,119,365
_14720
IAI46_14725: IAI46_14725 - multidrug efflux MFS transporter MdtH, at 3,119,711 to 3,120,916
_14725
Position (kb)
3118
3119 Strain fitness (log2 ratio)
-1
0
1 at 3117.184 kb on - strand at 3117.188 kb on - strand at 3117.195 kb on + strand at 3117.195 kb on + strand at 3117.196 kb on - strand at 3117.200 kb on + strand at 3117.200 kb on + strand at 3117.201 kb on - strand at 3117.201 kb on - strand at 3117.201 kb on - strand at 3117.210 kb on + strand at 3117.430 kb on + strand, within IAI46_14710 at 3117.430 kb on + strand, within IAI46_14710 at 3117.437 kb on + strand, within IAI46_14710 at 3117.463 kb on + strand, within IAI46_14710 at 3117.464 kb on - strand, within IAI46_14710 at 3117.579 kb on + strand, within IAI46_14710 at 3117.705 kb on + strand, within IAI46_14710 at 3117.705 kb on + strand, within IAI46_14710 at 3117.706 kb on - strand, within IAI46_14710 at 3117.730 kb on - strand, within IAI46_14710 at 3117.750 kb on - strand, within IAI46_14710 at 3117.818 kb on - strand, within IAI46_14710 at 3117.863 kb on + strand, within IAI46_14710 at 3118.080 kb on - strand at 3118.095 kb on + strand at 3118.129 kb on - strand at 3118.283 kb on - strand, within IAI46_14715 at 3118.283 kb on - strand, within IAI46_14715 at 3118.455 kb on - strand, within IAI46_14715 at 3118.530 kb on + strand, within IAI46_14715 at 3118.530 kb on + strand, within IAI46_14715 at 3118.531 kb on - strand, within IAI46_14715 at 3118.623 kb on - strand, within IAI46_14715 at 3118.765 kb on - strand at 3118.772 kb on + strand at 3118.773 kb on - strand at 3118.804 kb on + strand at 3118.858 kb on - strand, within IAI46_14720 at 3118.930 kb on + strand, within IAI46_14720 at 3118.931 kb on - strand, within IAI46_14720 at 3118.931 kb on - strand, within IAI46_14720 at 3118.931 kb on - strand, within IAI46_14720 at 3118.931 kb on - strand, within IAI46_14720 at 3118.932 kb on + strand, within IAI46_14720 at 3118.932 kb on + strand, within IAI46_14720 at 3118.933 kb on - strand, within IAI46_14720 at 3118.933 kb on - strand, within IAI46_14720 at 3118.933 kb on - strand, within IAI46_14720 at 3118.954 kb on + strand, within IAI46_14720 at 3118.954 kb on + strand, within IAI46_14720 at 3118.955 kb on - strand, within IAI46_14720 at 3118.973 kb on - strand, within IAI46_14720 at 3118.973 kb on - strand, within IAI46_14720 at 3118.973 kb on - strand, within IAI46_14720 at 3118.974 kb on + strand, within IAI46_14720 at 3119.131 kb on + strand, within IAI46_14720 at 3119.203 kb on - strand, within IAI46_14720 at 3119.265 kb on + strand, within IAI46_14720 at 3119.406 kb on - strand at 3119.428 kb on - strand at 3119.457 kb on + strand at 3119.489 kb on - strand at 3119.498 kb on + strand at 3119.565 kb on + strand at 3119.566 kb on - strand at 3119.604 kb on - strand at 3119.623 kb on + strand at 3119.627 kb on + strand at 3119.659 kb on + strand at 3119.660 kb on - strand at 3119.666 kb on + strand at 3119.693 kb on - strand at 3119.758 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 3,117,184 - -0.0 3,117,188 - +0.6 3,117,195 + -0.3 3,117,195 + -0.6 3,117,196 - +0.1 3,117,200 + -0.1 3,117,200 + -0.4 3,117,201 - -0.0 3,117,201 - +0.1 3,117,201 - +0.7 3,117,210 + +0.2 3,117,430 + IAI46_14710 0.24 +0.4 3,117,430 + IAI46_14710 0.24 +0.3 3,117,437 + IAI46_14710 0.25 +0.5 3,117,463 + IAI46_14710 0.28 +0.5 3,117,464 - IAI46_14710 0.28 -0.7 3,117,579 + IAI46_14710 0.41 +1.3 3,117,705 + IAI46_14710 0.55 +0.6 3,117,705 + IAI46_14710 0.55 -1.3 3,117,706 - IAI46_14710 0.55 +0.5 3,117,730 - IAI46_14710 0.58 +1.1 3,117,750 - IAI46_14710 0.60 -1.5 3,117,818 - IAI46_14710 0.68 +0.7 3,117,863 + IAI46_14710 0.73 +0.5 3,118,080 - +0.5 3,118,095 + +0.5 3,118,129 - +0.8 3,118,283 - IAI46_14715 0.24 -0.5 3,118,283 - IAI46_14715 0.24 +0.3 3,118,455 - IAI46_14715 0.51 +0.1 3,118,530 + IAI46_14715 0.62 +0.5 3,118,530 + IAI46_14715 0.62 -0.3 3,118,531 - IAI46_14715 0.63 -0.5 3,118,623 - IAI46_14715 0.77 +0.6 3,118,765 - +0.8 3,118,772 + +1.1 3,118,773 - -0.0 3,118,804 + +0.4 3,118,858 - IAI46_14720 0.13 -0.1 3,118,930 + IAI46_14720 0.25 -0.2 3,118,931 - IAI46_14720 0.26 -0.2 3,118,931 - IAI46_14720 0.26 -0.2 3,118,931 - IAI46_14720 0.26 -0.7 3,118,931 - IAI46_14720 0.26 -0.1 3,118,932 + IAI46_14720 0.26 +0.9 3,118,932 + IAI46_14720 0.26 -0.9 3,118,933 - IAI46_14720 0.26 -0.6 3,118,933 - IAI46_14720 0.26 +0.5 3,118,933 - IAI46_14720 0.26 +0.4 3,118,954 + IAI46_14720 0.30 -0.8 3,118,954 + IAI46_14720 0.30 +0.8 3,118,955 - IAI46_14720 0.30 +0.5 3,118,973 - IAI46_14720 0.33 +0.1 3,118,973 - IAI46_14720 0.33 -1.5 3,118,973 - IAI46_14720 0.33 +0.3 3,118,974 + IAI46_14720 0.33 -0.3 3,119,131 + IAI46_14720 0.60 +0.4 3,119,203 - IAI46_14720 0.72 -0.6 3,119,265 + IAI46_14720 0.83 -0.9 3,119,406 - +0.1 3,119,428 - -1.5 3,119,457 + -0.2 3,119,489 - +0.1 3,119,498 + -0.8 3,119,565 + -0.7 3,119,566 - -0.7 3,119,604 - -0.3 3,119,623 + +0.1 3,119,627 + -0.0 3,119,659 + +0.0 3,119,660 - -0.0 3,119,666 + -0.1 3,119,693 - +0.0 3,119,758 - +0.6
Or see this region's nucleotide sequence