Strain Fitness in Serratia liquefaciens MT49 around IAI46_14320

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14315 and IAI46_14320 are separated by 160 nucleotidesIAI46_14320 and IAI46_14325 are separated by 160 nucleotides IAI46_14315: IAI46_14315 - selenide, water dikinase SelD, at 3,036,977 to 3,038,020 _14315 IAI46_14320: IAI46_14320 - NAD(P)H nitroreductase, at 3,038,181 to 3,038,732 _14320 IAI46_14325: IAI46_14325 - signal peptide peptidase SppA, at 3,038,893 to 3,040,749 _14325 Position (kb) 3038 3039Strain fitness (log2 ratio) -2 -1 0 1 2at 3037.444 kb on + strand, within IAI46_14315at 3037.595 kb on + strand, within IAI46_14315at 3037.597 kb on + strand, within IAI46_14315at 3037.598 kb on - strand, within IAI46_14315at 3037.598 kb on - strand, within IAI46_14315at 3037.744 kb on - strand, within IAI46_14315at 3037.811 kb on - strand, within IAI46_14315at 3037.857 kb on + strand, within IAI46_14315at 3037.857 kb on + strand, within IAI46_14315at 3037.937 kb on - strandat 3038.020 kb on + strandat 3038.021 kb on - strandat 3038.021 kb on - strandat 3038.022 kb on + strandat 3038.023 kb on - strandat 3038.023 kb on - strandat 3038.023 kb on - strandat 3038.058 kb on + strandat 3038.058 kb on + strandat 3038.058 kb on + strandat 3038.058 kb on + strandat 3038.058 kb on + strandat 3038.058 kb on + strandat 3038.059 kb on - strandat 3038.086 kb on - strandat 3038.145 kb on + strandat 3038.182 kb on + strandat 3038.183 kb on - strandat 3038.188 kb on + strandat 3038.189 kb on - strandat 3038.189 kb on - strandat 3038.258 kb on - strand, within IAI46_14320at 3038.409 kb on + strand, within IAI46_14320at 3038.457 kb on + strand, within IAI46_14320at 3038.548 kb on - strand, within IAI46_14320at 3038.760 kb on - strandat 3038.775 kb on + strandat 3038.775 kb on + strandat 3038.775 kb on + strandat 3038.775 kb on + strandat 3038.805 kb on + strandat 3038.805 kb on + strandat 3038.806 kb on - strandat 3038.826 kb on + strandat 3038.854 kb on + strandat 3038.855 kb on - strandat 3038.956 kb on - strandat 3038.968 kb on - strandat 3038.968 kb on - strandat 3038.968 kb on - strandat 3038.974 kb on - strandat 3039.242 kb on + strand, within IAI46_14325at 3039.252 kb on - strand, within IAI46_14325at 3039.290 kb on - strand, within IAI46_14325at 3039.355 kb on + strand, within IAI46_14325at 3039.356 kb on - strand, within IAI46_14325at 3039.356 kb on - strand, within IAI46_14325at 3039.370 kb on + strand, within IAI46_14325at 3039.370 kb on + strand, within IAI46_14325at 3039.370 kb on + strand, within IAI46_14325at 3039.371 kb on - strand, within IAI46_14325at 3039.371 kb on - strand, within IAI46_14325at 3039.371 kb on - strand, within IAI46_14325at 3039.374 kb on - strand, within IAI46_14325at 3039.374 kb on - strand, within IAI46_14325at 3039.514 kb on + strand, within IAI46_14325at 3039.516 kb on + strand, within IAI46_14325at 3039.517 kb on - strand, within IAI46_14325at 3039.607 kb on + strand, within IAI46_14325

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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3,037,444 + IAI46_14315 0.45 +0.8
3,037,595 + IAI46_14315 0.59 -0.2
3,037,597 + IAI46_14315 0.59 -0.5
3,037,598 - IAI46_14315 0.59 -0.3
3,037,598 - IAI46_14315 0.59 +0.5
3,037,744 - IAI46_14315 0.73 +1.2
3,037,811 - IAI46_14315 0.80 +0.4
3,037,857 + IAI46_14315 0.84 +1.2
3,037,857 + IAI46_14315 0.84 +1.2
3,037,937 - -0.4
3,038,020 + +1.2
3,038,021 - +0.3
3,038,021 - +0.5
3,038,022 + +1.8
3,038,023 - -2.4
3,038,023 - +0.6
3,038,023 - -1.0
3,038,058 + -0.3
3,038,058 + +0.1
3,038,058 + -0.0
3,038,058 + +0.2
3,038,058 + +0.0
3,038,058 + +0.4
3,038,059 - +0.4
3,038,086 - +1.0
3,038,145 + -1.1
3,038,182 + +0.7
3,038,183 - +0.4
3,038,188 + -2.0
3,038,189 - -0.6
3,038,189 - +0.4
3,038,258 - IAI46_14320 0.14 +0.6
3,038,409 + IAI46_14320 0.41 +0.2
3,038,457 + IAI46_14320 0.50 -0.5
3,038,548 - IAI46_14320 0.66 -0.1
3,038,760 - +0.4
3,038,775 + -0.4
3,038,775 + +0.9
3,038,775 + -0.9
3,038,775 + -0.6
3,038,805 + -0.6
3,038,805 + -0.2
3,038,806 - -2.1
3,038,826 + +0.2
3,038,854 + +0.4
3,038,855 - +0.4
3,038,956 - -0.3
3,038,968 - -0.3
3,038,968 - -0.2
3,038,968 - -0.1
3,038,974 - -1.2
3,039,242 + IAI46_14325 0.19 -0.2
3,039,252 - IAI46_14325 0.19 -0.8
3,039,290 - IAI46_14325 0.21 +0.3
3,039,355 + IAI46_14325 0.25 +0.5
3,039,356 - IAI46_14325 0.25 +0.8
3,039,356 - IAI46_14325 0.25 -1.1
3,039,370 + IAI46_14325 0.26 +0.3
3,039,370 + IAI46_14325 0.26 +0.1
3,039,370 + IAI46_14325 0.26 +1.1
3,039,371 - IAI46_14325 0.26 -0.4
3,039,371 - IAI46_14325 0.26 -0.1
3,039,371 - IAI46_14325 0.26 -0.1
3,039,374 - IAI46_14325 0.26 -1.8
3,039,374 - IAI46_14325 0.26 +0.6
3,039,514 + IAI46_14325 0.33 +0.3
3,039,516 + IAI46_14325 0.34 +0.5
3,039,517 - IAI46_14325 0.34 -1.1
3,039,607 + IAI46_14325 0.38 -0.8

Or see this region's nucleotide sequence