Strain Fitness in Serratia liquefaciens MT49 around IAI46_14305

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14290 and IAI46_14295 are separated by 45 nucleotidesIAI46_14295 and IAI46_14300 are separated by 18 nucleotidesIAI46_14300 and IAI46_14305 overlap by 4 nucleotidesIAI46_14305 and IAI46_14310 overlap by 1 nucleotides IAI46_14290: IAI46_14290 - exodeoxyribonuclease III, at 3,032,372 to 3,033,178 _14290 IAI46_14295: IAI46_14295 - pyrimidine (deoxy)nucleoside triphosphate diphosphatase, at 3,033,224 to 3,033,625 _14295 IAI46_14300: IAI46_14300 - YnjH family protein, at 3,033,644 to 3,033,937 _14300 IAI46_14305: IAI46_14305 - DNA topoisomerase III, at 3,033,934 to 3,035,859 _14305 IAI46_14310: IAI46_14310 - tRNA 2-selenouridine(34) synthase MnmH, at 3,035,859 to 3,036,977 _14310 Position (kb) 3033 3034 3035 3036Strain fitness (log2 ratio) -2 -1 0 1 2at 3032.966 kb on + strand, within IAI46_14290at 3033.113 kb on + strandat 3033.434 kb on - strand, within IAI46_14295at 3033.434 kb on - strand, within IAI46_14295at 3033.460 kb on + strand, within IAI46_14295at 3033.465 kb on + strand, within IAI46_14295at 3033.465 kb on + strand, within IAI46_14295at 3033.596 kb on + strandat 3033.596 kb on + strandat 3033.597 kb on - strandat 3033.598 kb on + strandat 3033.609 kb on + strandat 3033.766 kb on - strand, within IAI46_14300at 3034.218 kb on + strand, within IAI46_14305at 3034.220 kb on + strand, within IAI46_14305at 3034.221 kb on - strand, within IAI46_14305at 3034.234 kb on - strand, within IAI46_14305at 3034.235 kb on + strand, within IAI46_14305at 3034.514 kb on - strand, within IAI46_14305at 3034.652 kb on + strand, within IAI46_14305at 3034.753 kb on - strand, within IAI46_14305at 3035.025 kb on - strand, within IAI46_14305at 3035.025 kb on - strand, within IAI46_14305at 3035.114 kb on + strand, within IAI46_14305at 3035.321 kb on + strand, within IAI46_14305at 3035.321 kb on + strand, within IAI46_14305at 3035.321 kb on + strand, within IAI46_14305at 3035.406 kb on + strand, within IAI46_14305at 3035.423 kb on - strand, within IAI46_14305at 3035.700 kb on - strandat 3035.726 kb on - strandat 3035.861 kb on - strandat 3035.881 kb on + strandat 3035.881 kb on + strandat 3035.881 kb on + strandat 3035.881 kb on + strandat 3035.962 kb on + strandat 3035.962 kb on + strandat 3035.962 kb on + strandat 3035.977 kb on + strand, within IAI46_14310at 3035.978 kb on - strand, within IAI46_14310at 3036.035 kb on - strand, within IAI46_14310at 3036.046 kb on - strand, within IAI46_14310at 3036.130 kb on + strand, within IAI46_14310at 3036.200 kb on + strand, within IAI46_14310at 3036.201 kb on - strand, within IAI46_14310at 3036.201 kb on - strand, within IAI46_14310at 3036.202 kb on + strand, within IAI46_14310at 3036.203 kb on - strand, within IAI46_14310at 3036.373 kb on - strand, within IAI46_14310at 3036.606 kb on - strand, within IAI46_14310at 3036.689 kb on - strand, within IAI46_14310at 3036.689 kb on - strand, within IAI46_14310

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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3,032,966 + IAI46_14290 0.74 +1.1
3,033,113 + -0.3
3,033,434 - IAI46_14295 0.52 -0.6
3,033,434 - IAI46_14295 0.52 -1.1
3,033,460 + IAI46_14295 0.59 -0.9
3,033,465 + IAI46_14295 0.60 +1.8
3,033,465 + IAI46_14295 0.60 +0.4
3,033,596 + -1.8
3,033,596 + +0.2
3,033,597 - -1.1
3,033,598 + +1.1
3,033,609 + +0.1
3,033,766 - IAI46_14300 0.41 -0.4
3,034,218 + IAI46_14305 0.15 +0.9
3,034,220 + IAI46_14305 0.15 -0.5
3,034,221 - IAI46_14305 0.15 -0.4
3,034,234 - IAI46_14305 0.16 -0.1
3,034,235 + IAI46_14305 0.16 +2.0
3,034,514 - IAI46_14305 0.30 +0.9
3,034,652 + IAI46_14305 0.37 -0.2
3,034,753 - IAI46_14305 0.43 +1.1
3,035,025 - IAI46_14305 0.57 -1.8
3,035,025 - IAI46_14305 0.57 -0.1
3,035,114 + IAI46_14305 0.61 -0.4
3,035,321 + IAI46_14305 0.72 -0.2
3,035,321 + IAI46_14305 0.72 +1.0
3,035,321 + IAI46_14305 0.72 -0.4
3,035,406 + IAI46_14305 0.76 +0.9
3,035,423 - IAI46_14305 0.77 +0.7
3,035,700 - +0.7
3,035,726 - +0.1
3,035,861 - +0.5
3,035,881 + +0.8
3,035,881 + -0.1
3,035,881 + -1.7
3,035,881 + +0.2
3,035,962 + -0.8
3,035,962 + +0.1
3,035,962 + -0.6
3,035,977 + IAI46_14310 0.11 -0.2
3,035,978 - IAI46_14310 0.11 -1.1
3,036,035 - IAI46_14310 0.16 +0.6
3,036,046 - IAI46_14310 0.17 +0.8
3,036,130 + IAI46_14310 0.24 -0.1
3,036,200 + IAI46_14310 0.30 -0.2
3,036,201 - IAI46_14310 0.31 +0.9
3,036,201 - IAI46_14310 0.31 -0.4
3,036,202 + IAI46_14310 0.31 -0.5
3,036,203 - IAI46_14310 0.31 +0.2
3,036,373 - IAI46_14310 0.46 -1.1
3,036,606 - IAI46_14310 0.67 +0.5
3,036,689 - IAI46_14310 0.74 -0.1
3,036,689 - IAI46_14310 0.74 +0.9

Or see this region's nucleotide sequence