Strain Fitness in Serratia liquefaciens MT49 around IAI46_13510

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13505 and IAI46_13510 are separated by 193 nucleotidesIAI46_13510 and IAI46_13515 are separated by 12 nucleotidesIAI46_13515 and IAI46_13520 overlap by 11 nucleotides IAI46_13505: IAI46_13505 - phage shock protein operon transcriptional activator, at 2,883,633 to 2,884,640 _13505 IAI46_13510: IAI46_13510 - GTP-binding protein, at 2,884,834 to 2,886,021 _13510 IAI46_13515: IAI46_13515 - carbonate dehydratase, at 2,886,034 to 2,886,594 _13515 IAI46_13520: IAI46_13520 - GTP cyclohydrolase I FolE2, at 2,886,584 to 2,887,513 _13520 Position (kb) 2884 2885 2886 2887Strain fitness (log2 ratio) -1 0 1 2at 2884.277 kb on + strand, within IAI46_13505at 2884.277 kb on + strand, within IAI46_13505at 2884.310 kb on - strand, within IAI46_13505at 2884.544 kb on + strandat 2884.544 kb on + strandat 2884.835 kb on + strandat 2884.872 kb on - strandat 2884.931 kb on - strandat 2885.046 kb on + strand, within IAI46_13510at 2885.047 kb on - strand, within IAI46_13510at 2885.057 kb on - strand, within IAI46_13510at 2885.087 kb on + strand, within IAI46_13510at 2885.088 kb on - strand, within IAI46_13510at 2885.170 kb on + strand, within IAI46_13510at 2885.170 kb on + strand, within IAI46_13510at 2885.171 kb on - strand, within IAI46_13510at 2885.171 kb on - strand, within IAI46_13510at 2885.208 kb on - strand, within IAI46_13510at 2885.296 kb on + strand, within IAI46_13510at 2885.297 kb on - strand, within IAI46_13510at 2885.480 kb on - strand, within IAI46_13510at 2885.741 kb on + strand, within IAI46_13510at 2885.952 kb on + strandat 2886.182 kb on + strand, within IAI46_13515at 2886.183 kb on - strand, within IAI46_13515at 2886.435 kb on + strand, within IAI46_13515at 2886.488 kb on + strand, within IAI46_13515at 2886.586 kb on - strandat 2886.586 kb on - strandat 2886.827 kb on - strand, within IAI46_13520at 2886.899 kb on - strand, within IAI46_13520at 2886.925 kb on + strand, within IAI46_13520

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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2,884,277 + IAI46_13505 0.64 -0.1
2,884,277 + IAI46_13505 0.64 +1.2
2,884,310 - IAI46_13505 0.67 +0.4
2,884,544 + +1.3
2,884,544 + +0.0
2,884,835 + -1.1
2,884,872 - +1.1
2,884,931 - -0.8
2,885,046 + IAI46_13510 0.18 -0.9
2,885,047 - IAI46_13510 0.18 -0.8
2,885,057 - IAI46_13510 0.19 +0.6
2,885,087 + IAI46_13510 0.21 +0.5
2,885,088 - IAI46_13510 0.21 +2.0
2,885,170 + IAI46_13510 0.28 +0.3
2,885,170 + IAI46_13510 0.28 +0.4
2,885,171 - IAI46_13510 0.28 +0.6
2,885,171 - IAI46_13510 0.28 +0.7
2,885,208 - IAI46_13510 0.31 +0.7
2,885,296 + IAI46_13510 0.39 +0.1
2,885,297 - IAI46_13510 0.39 +0.4
2,885,480 - IAI46_13510 0.54 +0.4
2,885,741 + IAI46_13510 0.76 +0.3
2,885,952 + -1.7
2,886,182 + IAI46_13515 0.26 -0.3
2,886,183 - IAI46_13515 0.27 +0.4
2,886,435 + IAI46_13515 0.71 -0.7
2,886,488 + IAI46_13515 0.81 +0.8
2,886,586 - -1.0
2,886,586 - -0.5
2,886,827 - IAI46_13520 0.26 -0.1
2,886,899 - IAI46_13520 0.34 -0.1
2,886,925 + IAI46_13520 0.37 -0.3

Or see this region's nucleotide sequence