Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_13285 and IAI46_13290 are separated by 28 nucleotides IAI46_13290 and IAI46_13295 are separated by 126 nucleotides IAI46_13295 and IAI46_13300 are separated by 73 nucleotides IAI46_13300 and IAI46_13305 overlap by 4 nucleotides
IAI46_13285: IAI46_13285 - amino acid permease, at 2,834,146 to 2,835,537
_13285
IAI46_13290: IAI46_13290 - hypothetical protein, at 2,835,566 to 2,835,982
_13290
IAI46_13295: IAI46_13295 - dihydromonapterin reductase, at 2,836,109 to 2,836,831
_13295
IAI46_13300: IAI46_13300 - two-component system response regulator RstA, at 2,836,905 to 2,837,630
_13300
IAI46_13305: IAI46_13305 - two-component system sensor histidine kinase RstB, at 2,837,627 to 2,838,931
_13305
Position (kb)
2836
2837 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2835.358 kb on + strand, within IAI46_13285 at 2835.358 kb on + strand, within IAI46_13285 at 2835.359 kb on - strand, within IAI46_13285 at 2835.401 kb on - strand at 2835.423 kb on + strand at 2835.427 kb on + strand at 2835.572 kb on - strand at 2835.622 kb on + strand, within IAI46_13290 at 2835.622 kb on + strand, within IAI46_13290 at 2835.623 kb on - strand, within IAI46_13290 at 2835.671 kb on - strand, within IAI46_13290 at 2835.691 kb on + strand, within IAI46_13290 at 2835.843 kb on - strand, within IAI46_13290 at 2835.870 kb on + strand, within IAI46_13290 at 2835.881 kb on + strand, within IAI46_13290 at 2835.922 kb on - strand, within IAI46_13290 at 2835.973 kb on + strand at 2835.974 kb on - strand at 2836.005 kb on - strand at 2836.007 kb on + strand at 2836.008 kb on - strand at 2836.008 kb on - strand at 2836.008 kb on - strand at 2836.056 kb on + strand at 2836.067 kb on - strand at 2836.230 kb on - strand, within IAI46_13295 at 2836.304 kb on + strand, within IAI46_13295 at 2836.304 kb on + strand, within IAI46_13295 at 2836.449 kb on - strand, within IAI46_13295 at 2836.449 kb on - strand, within IAI46_13295 at 2836.508 kb on - strand, within IAI46_13295 at 2836.526 kb on + strand, within IAI46_13295 at 2836.527 kb on - strand, within IAI46_13295 at 2836.527 kb on - strand, within IAI46_13295 at 2836.562 kb on + strand, within IAI46_13295 at 2836.591 kb on + strand, within IAI46_13295 at 2836.591 kb on + strand, within IAI46_13295 at 2836.592 kb on - strand, within IAI46_13295 at 2836.661 kb on - strand, within IAI46_13295 at 2836.910 kb on + strand at 2836.979 kb on + strand, within IAI46_13300 at 2837.064 kb on - strand, within IAI46_13300 at 2837.481 kb on + strand, within IAI46_13300 at 2837.481 kb on + strand, within IAI46_13300 at 2837.538 kb on + strand, within IAI46_13300 at 2837.539 kb on - strand, within IAI46_13300 at 2837.582 kb on + strand at 2837.583 kb on - strand at 2837.706 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 2,835,358 + IAI46_13285 0.87 +0.4 2,835,358 + IAI46_13285 0.87 +0.2 2,835,359 - IAI46_13285 0.87 +0.0 2,835,401 - -0.4 2,835,423 + +1.2 2,835,427 + +2.1 2,835,572 - +1.6 2,835,622 + IAI46_13290 0.13 -1.1 2,835,622 + IAI46_13290 0.13 +0.6 2,835,623 - IAI46_13290 0.14 +0.4 2,835,671 - IAI46_13290 0.25 -1.7 2,835,691 + IAI46_13290 0.30 +0.3 2,835,843 - IAI46_13290 0.66 +0.3 2,835,870 + IAI46_13290 0.73 -0.4 2,835,881 + IAI46_13290 0.76 -2.3 2,835,922 - IAI46_13290 0.85 +0.1 2,835,973 + +0.3 2,835,974 - +0.4 2,836,005 - +0.4 2,836,007 + -1.1 2,836,008 - +0.3 2,836,008 - +0.7 2,836,008 - -0.0 2,836,056 + -0.0 2,836,067 - -0.2 2,836,230 - IAI46_13295 0.17 +0.1 2,836,304 + IAI46_13295 0.27 +0.5 2,836,304 + IAI46_13295 0.27 +0.9 2,836,449 - IAI46_13295 0.47 -0.4 2,836,449 - IAI46_13295 0.47 +1.2 2,836,508 - IAI46_13295 0.55 +0.7 2,836,526 + IAI46_13295 0.58 +0.1 2,836,527 - IAI46_13295 0.58 +0.6 2,836,527 - IAI46_13295 0.58 -0.1 2,836,562 + IAI46_13295 0.63 +0.9 2,836,591 + IAI46_13295 0.67 +0.2 2,836,591 + IAI46_13295 0.67 -0.3 2,836,592 - IAI46_13295 0.67 +1.1 2,836,661 - IAI46_13295 0.76 +0.2 2,836,910 + +0.9 2,836,979 + IAI46_13300 0.10 +1.2 2,837,064 - IAI46_13300 0.22 +0.3 2,837,481 + IAI46_13300 0.79 +0.3 2,837,481 + IAI46_13300 0.79 +0.1 2,837,538 + IAI46_13300 0.87 +0.0 2,837,539 - IAI46_13300 0.87 +0.2 2,837,582 + -0.7 2,837,583 - -0.4 2,837,706 - -0.4
Or see this region's nucleotide sequence