Strain Fitness in Serratia liquefaciens MT49 around IAI46_12915

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12905 and IAI46_12910 are separated by 210 nucleotidesIAI46_12910 and IAI46_12915 are separated by 14 nucleotidesIAI46_12915 and IAI46_12920 are separated by 112 nucleotides IAI46_12905: IAI46_12905 - D-serine ammonia-lyase, at 2,751,815 to 2,753,152 _12905 IAI46_12910: IAI46_12910 - VOC family protein, at 2,753,363 to 2,753,833 _12910 IAI46_12915: IAI46_12915 - DUF1428 family protein, at 2,753,848 to 2,754,201 _12915 IAI46_12920: IAI46_12920 - diguanylate cyclase, at 2,754,314 to 2,755,756 _12920 Position (kb) 2753 2754 2755Strain fitness (log2 ratio) -2 -1 0 1 2at 2752.959 kb on - strand, within IAI46_12905at 2753.007 kb on - strand, within IAI46_12905at 2753.007 kb on - strand, within IAI46_12905at 2753.361 kb on + strandat 2753.365 kb on - strandat 2753.659 kb on - strand, within IAI46_12910at 2753.813 kb on + strandat 2753.814 kb on - strandat 2753.814 kb on - strandat 2753.985 kb on - strand, within IAI46_12915at 2754.142 kb on + strand, within IAI46_12915at 2754.147 kb on - strand, within IAI46_12915at 2754.325 kb on + strandat 2754.326 kb on - strandat 2754.327 kb on + strandat 2754.629 kb on + strand, within IAI46_12920at 2754.709 kb on + strand, within IAI46_12920at 2754.710 kb on - strand, within IAI46_12920at 2754.803 kb on + strand, within IAI46_12920at 2754.803 kb on + strand, within IAI46_12920at 2754.803 kb on + strand, within IAI46_12920at 2754.804 kb on - strand, within IAI46_12920at 2754.934 kb on + strand, within IAI46_12920at 2754.935 kb on - strand, within IAI46_12920at 2755.004 kb on + strand, within IAI46_12920at 2755.004 kb on + strand, within IAI46_12920at 2755.004 kb on + strand, within IAI46_12920at 2755.004 kb on + strand, within IAI46_12920at 2755.005 kb on - strand, within IAI46_12920at 2755.005 kb on - strand, within IAI46_12920at 2755.005 kb on - strand, within IAI46_12920at 2755.160 kb on - strand, within IAI46_12920

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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2,752,959 - IAI46_12905 0.86 +0.2
2,753,007 - IAI46_12905 0.89 +0.8
2,753,007 - IAI46_12905 0.89 -0.5
2,753,361 + -2.2
2,753,365 - -2.2
2,753,659 - IAI46_12910 0.63 -0.0
2,753,813 + +1.4
2,753,814 - +1.9
2,753,814 - +0.7
2,753,985 - IAI46_12915 0.39 -0.5
2,754,142 + IAI46_12915 0.83 +0.1
2,754,147 - IAI46_12915 0.84 +0.8
2,754,325 + +0.4
2,754,326 - -1.4
2,754,327 + +1.1
2,754,629 + IAI46_12920 0.22 -1.1
2,754,709 + IAI46_12920 0.27 -0.2
2,754,710 - IAI46_12920 0.27 +1.6
2,754,803 + IAI46_12920 0.34 -0.1
2,754,803 + IAI46_12920 0.34 -0.6
2,754,803 + IAI46_12920 0.34 +1.4
2,754,804 - IAI46_12920 0.34 +0.8
2,754,934 + IAI46_12920 0.43 -1.8
2,754,935 - IAI46_12920 0.43 -0.6
2,755,004 + IAI46_12920 0.48 -0.2
2,755,004 + IAI46_12920 0.48 +0.9
2,755,004 + IAI46_12920 0.48 +0.4
2,755,004 + IAI46_12920 0.48 +0.5
2,755,005 - IAI46_12920 0.48 +0.1
2,755,005 - IAI46_12920 0.48 +0.2
2,755,005 - IAI46_12920 0.48 -0.1
2,755,160 - IAI46_12920 0.59 -0.8

Or see this region's nucleotide sequence