Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_12600 and IAI46_12605 overlap by 23 nucleotides IAI46_12605 and IAI46_12610 are separated by 244 nucleotides IAI46_12610 and IAI46_12615 are separated by 577 nucleotides
IAI46_12600: IAI46_12600 - hypothetical protein, at 2,677,569 to 2,677,886
_12600
IAI46_12605: IAI46_12605 - nuclear transport factor 2 family protein, at 2,677,864 to 2,678,397
_12605
IAI46_12610: IAI46_12610 - alpha/beta hydrolase, at 2,678,642 to 2,679,472
_12610
IAI46_12615: IAI46_12615 - hypothetical protein, at 2,680,050 to 2,680,562
_12615
Position (kb)
2678
2679
2680 Strain fitness (log2 ratio)
-1
0
1
2 at 2678.252 kb on + strand, within IAI46_12605 at 2678.406 kb on - strand at 2678.470 kb on + strand at 2678.499 kb on + strand at 2678.618 kb on + strand at 2678.653 kb on - strand at 2678.854 kb on + strand, within IAI46_12610 at 2678.957 kb on + strand, within IAI46_12610 at 2678.985 kb on + strand, within IAI46_12610 at 2679.113 kb on + strand, within IAI46_12610 at 2679.231 kb on - strand, within IAI46_12610 at 2679.533 kb on + strand at 2679.792 kb on - strand at 2679.935 kb on + strand at 2679.935 kb on + strand at 2679.936 kb on - strand at 2680.253 kb on + strand, within IAI46_12615 at 2680.326 kb on + strand, within IAI46_12615 at 2680.433 kb on + strand, within IAI46_12615
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 2,678,252 + IAI46_12605 0.73 +0.4 2,678,406 - +0.7 2,678,470 + +2.1 2,678,499 + +0.5 2,678,618 + -0.3 2,678,653 - -1.6 2,678,854 + IAI46_12610 0.26 +0.6 2,678,957 + IAI46_12610 0.38 +0.6 2,678,985 + IAI46_12610 0.41 +0.5 2,679,113 + IAI46_12610 0.57 +0.9 2,679,231 - IAI46_12610 0.71 +0.4 2,679,533 + +0.4 2,679,792 - +0.3 2,679,935 + -0.3 2,679,935 + +0.8 2,679,936 - +0.4 2,680,253 + IAI46_12615 0.40 -0.2 2,680,326 + IAI46_12615 0.54 -0.2 2,680,433 + IAI46_12615 0.75 +2.0
Or see this region's nucleotide sequence