Strain Fitness in Serratia liquefaciens MT49 around IAI46_12565

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12560 and IAI46_12565 overlap by 4 nucleotidesIAI46_12565 and IAI46_12570 are separated by 88 nucleotides IAI46_12560: IAI46_12560 - hydrogenase formation protein HypD, at 2,668,452 to 2,669,579 _12560 IAI46_12565: IAI46_12565 - hydrogenase expression/formation protein HypE, at 2,669,576 to 2,670,589 _12565 IAI46_12570: IAI46_12570 - formate hydrogenlyase transcriptional activator FlhA, at 2,670,678 to 2,672,744 _12570 Position (kb) 2669 2670 2671Strain fitness (log2 ratio) -1 0 1at 2668.963 kb on + strand, within IAI46_12560at 2669.023 kb on + strand, within IAI46_12560at 2669.328 kb on - strand, within IAI46_12560at 2669.328 kb on - strand, within IAI46_12560at 2669.590 kb on + strandat 2669.590 kb on + strandat 2669.593 kb on + strandat 2669.756 kb on + strand, within IAI46_12565at 2669.793 kb on + strand, within IAI46_12565at 2669.872 kb on + strand, within IAI46_12565at 2669.904 kb on + strand, within IAI46_12565at 2669.950 kb on + strand, within IAI46_12565at 2670.124 kb on + strand, within IAI46_12565at 2670.151 kb on + strand, within IAI46_12565at 2670.151 kb on + strand, within IAI46_12565at 2670.152 kb on - strand, within IAI46_12565at 2670.513 kb on + strandat 2670.513 kb on + strandat 2670.530 kb on + strandat 2670.778 kb on + strandat 2670.778 kb on + strandat 2670.886 kb on - strand, within IAI46_12570at 2671.009 kb on - strand, within IAI46_12570at 2671.425 kb on + strand, within IAI46_12570at 2671.432 kb on + strand, within IAI46_12570at 2671.432 kb on + strand, within IAI46_12570at 2671.521 kb on + strand, within IAI46_12570at 2671.521 kb on + strand, within IAI46_12570at 2671.573 kb on + strand, within IAI46_12570

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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2,668,963 + IAI46_12560 0.45 +0.5
2,669,023 + IAI46_12560 0.51 +0.1
2,669,328 - IAI46_12560 0.78 -0.9
2,669,328 - IAI46_12560 0.78 +1.4
2,669,590 + +1.3
2,669,590 + +1.2
2,669,593 + -0.4
2,669,756 + IAI46_12565 0.18 +0.7
2,669,793 + IAI46_12565 0.21 +0.5
2,669,872 + IAI46_12565 0.29 +0.1
2,669,904 + IAI46_12565 0.32 +1.1
2,669,950 + IAI46_12565 0.37 +0.5
2,670,124 + IAI46_12565 0.54 +0.5
2,670,151 + IAI46_12565 0.57 -0.9
2,670,151 + IAI46_12565 0.57 -0.2
2,670,152 - IAI46_12565 0.57 +0.3
2,670,513 + +0.3
2,670,513 + -0.0
2,670,530 + +0.0
2,670,778 + +0.5
2,670,778 + -0.5
2,670,886 - IAI46_12570 0.10 -1.0
2,671,009 - IAI46_12570 0.16 -1.2
2,671,425 + IAI46_12570 0.36 -0.3
2,671,432 + IAI46_12570 0.36 -1.6
2,671,432 + IAI46_12570 0.36 +0.3
2,671,521 + IAI46_12570 0.41 -0.3
2,671,521 + IAI46_12570 0.41 +0.2
2,671,573 + IAI46_12570 0.43 -0.2

Or see this region's nucleotide sequence