Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_12445 and IAI46_12450 are separated by 169 nucleotides IAI46_12450 and IAI46_12455 are separated by 24 nucleotides IAI46_12455 and IAI46_12460 overlap by 4 nucleotides
IAI46_12445: IAI46_12445 - GMC family oxidoreductase N-terminal domain-containing protein, at 2,644,189 to 2,645,811
_12445
IAI46_12450: IAI46_12450 - SDR family oxidoreductase, at 2,645,981 to 2,646,760
_12450
IAI46_12455: IAI46_12455 - FCD domain-containing protein, at 2,646,785 to 2,647,525
_12455
IAI46_12460: IAI46_12460 - fumarylacetoacetate hydrolase family protein, at 2,647,522 to 2,648,367
_12460
Position (kb)
2645
2646
2647 Strain fitness (log2 ratio)
-1
0
1
2 at 2645.106 kb on + strand, within IAI46_12445 at 2645.110 kb on + strand, within IAI46_12445 at 2645.248 kb on - strand, within IAI46_12445 at 2645.306 kb on + strand, within IAI46_12445 at 2645.442 kb on - strand, within IAI46_12445 at 2645.622 kb on - strand, within IAI46_12445 at 2645.787 kb on - strand at 2645.925 kb on + strand at 2645.925 kb on + strand at 2646.016 kb on - strand at 2646.177 kb on + strand, within IAI46_12450 at 2646.177 kb on + strand, within IAI46_12450 at 2646.242 kb on - strand, within IAI46_12450 at 2646.245 kb on - strand, within IAI46_12450 at 2646.706 kb on + strand at 2646.756 kb on + strand at 2646.774 kb on + strand at 2647.060 kb on + strand, within IAI46_12455 at 2647.095 kb on + strand, within IAI46_12455 at 2647.443 kb on - strand, within IAI46_12455 at 2647.488 kb on + strand at 2647.488 kb on + strand at 2647.654 kb on - strand, within IAI46_12460
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 2,645,106 + IAI46_12445 0.57 -0.1 2,645,110 + IAI46_12445 0.57 +0.2 2,645,248 - IAI46_12445 0.65 -0.2 2,645,306 + IAI46_12445 0.69 +0.1 2,645,442 - IAI46_12445 0.77 -0.9 2,645,622 - IAI46_12445 0.88 +1.0 2,645,787 - +0.1 2,645,925 + -0.0 2,645,925 + -0.2 2,646,016 - -0.8 2,646,177 + IAI46_12450 0.25 +1.4 2,646,177 + IAI46_12450 0.25 +0.4 2,646,242 - IAI46_12450 0.33 -0.0 2,646,245 - IAI46_12450 0.34 +0.3 2,646,706 + +1.0 2,646,756 + -0.2 2,646,774 + +2.4 2,647,060 + IAI46_12455 0.37 +0.3 2,647,095 + IAI46_12455 0.42 -0.4 2,647,443 - IAI46_12455 0.89 +1.2 2,647,488 + +2.1 2,647,488 + +0.2 2,647,654 - IAI46_12460 0.16 +0.2
Or see this region's nucleotide sequence