Strain Fitness in Serratia liquefaciens MT49 around IAI46_11510

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11505 and IAI46_11510 are separated by 361 nucleotidesIAI46_11510 and IAI46_11515 are separated by 60 nucleotides IAI46_11505: IAI46_11505 - ribulokinase, at 2,428,083 to 2,429,768 _11505 IAI46_11510: IAI46_11510 - arabinose ABC transporter substrate-binding protein, at 2,430,130 to 2,431,113 _11510 IAI46_11515: IAI46_11515 - L-arabinose ABC transporter ATP-binding protein AraG, at 2,431,174 to 2,432,709 _11515 Position (kb) 2430 2431 2432Strain fitness (log2 ratio) -1 0 1 2at 2429.148 kb on + strand, within IAI46_11505at 2429.148 kb on + strand, within IAI46_11505at 2429.309 kb on - strand, within IAI46_11505at 2429.589 kb on - strand, within IAI46_11505at 2429.590 kb on + strand, within IAI46_11505at 2429.591 kb on - strand, within IAI46_11505at 2429.591 kb on - strand, within IAI46_11505at 2429.591 kb on - strand, within IAI46_11505at 2429.753 kb on + strandat 2429.790 kb on - strandat 2429.792 kb on + strandat 2429.793 kb on - strandat 2429.793 kb on - strandat 2429.808 kb on + strandat 2429.808 kb on + strandat 2429.901 kb on + strandat 2429.925 kb on + strandat 2429.925 kb on + strandat 2429.926 kb on - strandat 2429.927 kb on + strandat 2429.928 kb on - strandat 2429.935 kb on + strandat 2429.936 kb on - strandat 2430.045 kb on + strandat 2430.065 kb on + strandat 2430.177 kb on + strandat 2430.306 kb on + strand, within IAI46_11510at 2430.496 kb on - strand, within IAI46_11510at 2430.663 kb on + strand, within IAI46_11510at 2430.943 kb on + strand, within IAI46_11510at 2430.961 kb on - strand, within IAI46_11510at 2430.979 kb on + strand, within IAI46_11510at 2431.023 kb on - strandat 2431.111 kb on + strandat 2431.173 kb on + strandat 2431.173 kb on + strandat 2431.211 kb on + strandat 2431.212 kb on - strandat 2431.212 kb on - strandat 2431.483 kb on + strand, within IAI46_11515at 2431.483 kb on + strand, within IAI46_11515at 2431.600 kb on + strand, within IAI46_11515at 2431.600 kb on + strand, within IAI46_11515at 2431.665 kb on - strand, within IAI46_11515at 2431.765 kb on + strand, within IAI46_11515at 2431.766 kb on - strand, within IAI46_11515at 2431.766 kb on - strand, within IAI46_11515at 2431.766 kb on - strand, within IAI46_11515at 2431.766 kb on - strand, within IAI46_11515at 2431.766 kb on - strand, within IAI46_11515at 2431.835 kb on - strand, within IAI46_11515at 2431.835 kb on - strand, within IAI46_11515

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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2,429,148 + IAI46_11505 0.63 +0.0
2,429,148 + IAI46_11505 0.63 +0.4
2,429,309 - IAI46_11505 0.73 +0.9
2,429,589 - IAI46_11505 0.89 +1.8
2,429,590 + IAI46_11505 0.89 +0.2
2,429,591 - IAI46_11505 0.89 +0.2
2,429,591 - IAI46_11505 0.89 -0.2
2,429,591 - IAI46_11505 0.89 +0.8
2,429,753 + +0.3
2,429,790 - -1.4
2,429,792 + -0.5
2,429,793 - +0.4
2,429,793 - +0.6
2,429,808 + +0.5
2,429,808 + -0.2
2,429,901 + -0.8
2,429,925 + -0.8
2,429,925 + +1.5
2,429,926 - +0.1
2,429,927 + -0.3
2,429,928 - -0.3
2,429,935 + +0.1
2,429,936 - +0.0
2,430,045 + +0.2
2,430,065 + +0.6
2,430,177 + +0.4
2,430,306 + IAI46_11510 0.18 +0.8
2,430,496 - IAI46_11510 0.37 +1.5
2,430,663 + IAI46_11510 0.54 +1.3
2,430,943 + IAI46_11510 0.83 +0.6
2,430,961 - IAI46_11510 0.84 +0.2
2,430,979 + IAI46_11510 0.86 +0.0
2,431,023 - -0.5
2,431,111 + +0.3
2,431,173 + -0.2
2,431,173 + +1.0
2,431,211 + +1.2
2,431,212 - -0.4
2,431,212 - -0.9
2,431,483 + IAI46_11515 0.20 -0.1
2,431,483 + IAI46_11515 0.20 -0.1
2,431,600 + IAI46_11515 0.28 +1.0
2,431,600 + IAI46_11515 0.28 -0.3
2,431,665 - IAI46_11515 0.32 +0.2
2,431,765 + IAI46_11515 0.38 +0.6
2,431,766 - IAI46_11515 0.39 +0.8
2,431,766 - IAI46_11515 0.39 -0.4
2,431,766 - IAI46_11515 0.39 +1.1
2,431,766 - IAI46_11515 0.39 +0.5
2,431,766 - IAI46_11515 0.39 +0.2
2,431,835 - IAI46_11515 0.43 -0.4
2,431,835 - IAI46_11515 0.43 -0.8

Or see this region's nucleotide sequence