Strain Fitness in Serratia liquefaciens MT49 around IAI46_11160

Experiment: Cobalt chloride 80 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_11150 and IAI46_11155 are separated by 42 nucleotidesIAI46_11155 and IAI46_11160 overlap by 26 nucleotidesIAI46_11160 and IAI46_11165 overlap by 4 nucleotides IAI46_11150: IAI46_11150 - Fe-S cluster assembly protein SufB, at 2,357,450 to 2,358,946 _11150 IAI46_11155: IAI46_11155 - Fe-S cluster assembly ATPase SufC, at 2,358,989 to 2,359,735 _11155 IAI46_11160: IAI46_11160 - Fe-S cluster assembly protein SufD, at 2,359,710 to 2,361,002 _11160 IAI46_11165: IAI46_11165 - cysteine desulfurase SufS, at 2,360,999 to 2,362,219 _11165 Position (kb) 2359 2360 2361 2362Strain fitness (log2 ratio) -2 -1 0 1at 2358.710 kb on - strand, within IAI46_11150at 2358.720 kb on - strand, within IAI46_11150at 2358.797 kb on + strandat 2358.797 kb on + strandat 2358.798 kb on - strandat 2358.993 kb on + strandat 2359.145 kb on + strand, within IAI46_11155at 2359.606 kb on + strand, within IAI46_11155at 2359.607 kb on - strand, within IAI46_11155at 2359.616 kb on + strand, within IAI46_11155at 2359.632 kb on - strand, within IAI46_11155at 2359.632 kb on - strand, within IAI46_11155at 2359.709 kb on + strandat 2359.759 kb on - strandat 2360.032 kb on - strand, within IAI46_11160at 2360.052 kb on + strand, within IAI46_11160at 2360.138 kb on + strand, within IAI46_11160at 2360.157 kb on - strand, within IAI46_11160at 2360.178 kb on + strand, within IAI46_11160at 2360.401 kb on - strand, within IAI46_11160at 2360.522 kb on + strand, within IAI46_11160at 2360.522 kb on + strand, within IAI46_11160at 2360.778 kb on + strand, within IAI46_11160at 2360.822 kb on + strand, within IAI46_11160at 2361.264 kb on + strand, within IAI46_11165at 2361.264 kb on + strand, within IAI46_11165at 2361.449 kb on - strand, within IAI46_11165at 2361.449 kb on - strand, within IAI46_11165at 2361.680 kb on + strand, within IAI46_11165at 2361.680 kb on + strand, within IAI46_11165at 2361.707 kb on + strand, within IAI46_11165at 2361.797 kb on + strand, within IAI46_11165at 2361.797 kb on + strand, within IAI46_11165at 2361.875 kb on + strand, within IAI46_11165at 2361.875 kb on + strand, within IAI46_11165at 2361.876 kb on - strand, within IAI46_11165at 2361.876 kb on - strand, within IAI46_11165at 2361.932 kb on + strand, within IAI46_11165at 2361.975 kb on - strand, within IAI46_11165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
remove
2,358,710 - IAI46_11150 0.84 +0.3
2,358,720 - IAI46_11150 0.85 -0.1
2,358,797 + +0.5
2,358,797 + +0.7
2,358,798 - -1.5
2,358,993 + +0.5
2,359,145 + IAI46_11155 0.21 +0.1
2,359,606 + IAI46_11155 0.83 -1.4
2,359,607 - IAI46_11155 0.83 -0.4
2,359,616 + IAI46_11155 0.84 -0.6
2,359,632 - IAI46_11155 0.86 +0.3
2,359,632 - IAI46_11155 0.86 -0.1
2,359,709 + -0.8
2,359,759 - +0.5
2,360,032 - IAI46_11160 0.25 -0.3
2,360,052 + IAI46_11160 0.26 -0.4
2,360,138 + IAI46_11160 0.33 +1.1
2,360,157 - IAI46_11160 0.35 -0.2
2,360,178 + IAI46_11160 0.36 -0.5
2,360,401 - IAI46_11160 0.53 +0.5
2,360,522 + IAI46_11160 0.63 +0.6
2,360,522 + IAI46_11160 0.63 -0.5
2,360,778 + IAI46_11160 0.83 +0.2
2,360,822 + IAI46_11160 0.86 -1.8
2,361,264 + IAI46_11165 0.22 -0.4
2,361,264 + IAI46_11165 0.22 -2.2
2,361,449 - IAI46_11165 0.37 +0.3
2,361,449 - IAI46_11165 0.37 +0.4
2,361,680 + IAI46_11165 0.56 -1.4
2,361,680 + IAI46_11165 0.56 +0.0
2,361,707 + IAI46_11165 0.58 +0.1
2,361,797 + IAI46_11165 0.65 -1.1
2,361,797 + IAI46_11165 0.65 -0.7
2,361,875 + IAI46_11165 0.72 -0.5
2,361,875 + IAI46_11165 0.72 +0.4
2,361,876 - IAI46_11165 0.72 -0.1
2,361,876 - IAI46_11165 0.72 -1.5
2,361,932 + IAI46_11165 0.76 -1.2
2,361,975 - IAI46_11165 0.80 +0.2

Or see this region's nucleotide sequence