Strain Fitness in Serratia liquefaciens MT49 around IAI46_09645

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09635 and IAI46_09640 are separated by 140 nucleotidesIAI46_09640 and IAI46_09645 overlap by 4 nucleotidesIAI46_09645 and IAI46_09650 are separated by 4 nucleotidesIAI46_09650 and IAI46_09655 overlap by 1 nucleotidesIAI46_09655 and IAI46_09660 are separated by 49 nucleotides IAI46_09635: IAI46_09635 - helix-turn-helix transcriptional regulator, at 2,045,296 to 2,046,057 _09635 IAI46_09640: IAI46_09640 - winged helix-turn-helix transcriptional regulator, at 2,046,198 to 2,046,509 _09640 IAI46_09645: IAI46_09645 - YeeE/YedE family protein, at 2,046,506 to 2,046,940 _09645 IAI46_09650: IAI46_09650 - YeeE/YedE family protein, at 2,046,945 to 2,047,364 _09650 IAI46_09655: IAI46_09655 - VOC family protein, at 2,047,364 to 2,047,762 _09655 IAI46_09660: IAI46_09660 - peptide MFS transporter, at 2,047,812 to 2,049,365 _09660 Position (kb) 2046 2047Strain fitness (log2 ratio) -2 -1 0 1at 2045.529 kb on + strand, within IAI46_09635at 2045.529 kb on + strand, within IAI46_09635at 2045.542 kb on + strand, within IAI46_09635at 2045.543 kb on - strand, within IAI46_09635at 2045.574 kb on + strand, within IAI46_09635at 2045.806 kb on + strand, within IAI46_09635at 2045.807 kb on - strand, within IAI46_09635at 2045.966 kb on + strand, within IAI46_09635at 2046.150 kb on - strandat 2046.156 kb on + strandat 2046.414 kb on - strand, within IAI46_09640at 2046.423 kb on + strand, within IAI46_09640at 2046.426 kb on + strand, within IAI46_09640at 2046.426 kb on + strand, within IAI46_09640at 2046.461 kb on + strand, within IAI46_09640at 2046.469 kb on + strand, within IAI46_09640at 2046.471 kb on + strand, within IAI46_09640at 2046.472 kb on - strand, within IAI46_09640at 2046.653 kb on - strand, within IAI46_09645at 2046.781 kb on - strand, within IAI46_09645at 2046.886 kb on + strand, within IAI46_09645at 2046.887 kb on - strand, within IAI46_09645at 2046.901 kb on + strandat 2046.939 kb on - strandat 2046.949 kb on - strandat 2046.968 kb on - strandat 2047.162 kb on + strand, within IAI46_09650at 2047.163 kb on - strand, within IAI46_09650at 2047.336 kb on - strandat 2047.336 kb on - strandat 2047.343 kb on + strandat 2047.343 kb on + strandat 2047.362 kb on + strandat 2047.363 kb on - strandat 2047.371 kb on + strandat 2047.599 kb on - strand, within IAI46_09655at 2047.674 kb on - strand, within IAI46_09655at 2047.674 kb on - strand, within IAI46_09655at 2047.810 kb on + strandat 2047.844 kb on + strandat 2047.844 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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2,045,529 + IAI46_09635 0.31 -0.1
2,045,529 + IAI46_09635 0.31 +1.4
2,045,542 + IAI46_09635 0.32 +0.8
2,045,543 - IAI46_09635 0.32 -0.8
2,045,574 + IAI46_09635 0.36 +0.6
2,045,806 + IAI46_09635 0.67 +0.4
2,045,807 - IAI46_09635 0.67 +0.4
2,045,966 + IAI46_09635 0.88 +0.6
2,046,150 - +0.3
2,046,156 + +0.6
2,046,414 - IAI46_09640 0.69 +0.3
2,046,423 + IAI46_09640 0.72 +0.7
2,046,426 + IAI46_09640 0.73 -0.2
2,046,426 + IAI46_09640 0.73 -0.3
2,046,461 + IAI46_09640 0.84 +0.4
2,046,469 + IAI46_09640 0.87 -0.7
2,046,471 + IAI46_09640 0.88 +0.3
2,046,472 - IAI46_09640 0.88 +0.2
2,046,653 - IAI46_09645 0.34 +0.2
2,046,781 - IAI46_09645 0.63 -2.0
2,046,886 + IAI46_09645 0.87 +0.6
2,046,887 - IAI46_09645 0.88 +1.2
2,046,901 + -0.3
2,046,939 - +0.1
2,046,949 - +0.0
2,046,968 - -0.7
2,047,162 + IAI46_09650 0.52 +0.0
2,047,163 - IAI46_09650 0.52 -0.4
2,047,336 - -1.1
2,047,336 - +0.9
2,047,343 + +0.0
2,047,343 + +1.1
2,047,362 + +0.5
2,047,363 - -0.3
2,047,371 + -0.4
2,047,599 - IAI46_09655 0.59 -2.3
2,047,674 - IAI46_09655 0.78 -0.9
2,047,674 - IAI46_09655 0.78 +0.1
2,047,810 + +0.9
2,047,844 + -0.2
2,047,844 + +0.0

Or see this region's nucleotide sequence