Strain Fitness in Serratia liquefaciens MT49 around IAI46_08190

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08180 and IAI46_08185 overlap by 7 nucleotidesIAI46_08185 and IAI46_08190 overlap by 19 nucleotidesIAI46_08190 and IAI46_08195 are separated by 5 nucleotidesIAI46_08195 and IAI46_08200 overlap by 1 nucleotides IAI46_08180: IAI46_08180 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 1,743,010 to 1,743,630 _08180 IAI46_08185: IAI46_08185 - imidazole glycerol phosphate synthase subunit HisF, at 1,743,624 to 1,744,400 _08185 IAI46_08190: IAI46_08190 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 1,744,382 to 1,745,119 _08190 IAI46_08195: IAI46_08195 - imidazole glycerol phosphate synthase subunit HisH, at 1,745,125 to 1,745,715 _08195 IAI46_08200: IAI46_08200 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 1,745,715 to 1,746,782 _08200 Position (kb) 1744 1745 1746Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1743.409 kb on + strand, within IAI46_08180at 1743.409 kb on + strand, within IAI46_08180at 1743.409 kb on + strand, within IAI46_08180at 1743.409 kb on + strand, within IAI46_08180at 1743.410 kb on - strand, within IAI46_08180at 1743.463 kb on - strand, within IAI46_08180at 1743.463 kb on - strand, within IAI46_08180at 1743.525 kb on - strand, within IAI46_08180at 1743.839 kb on - strand, within IAI46_08185at 1743.967 kb on + strand, within IAI46_08185at 1743.968 kb on - strand, within IAI46_08185at 1743.968 kb on - strand, within IAI46_08185at 1744.252 kb on + strand, within IAI46_08185at 1744.286 kb on - strand, within IAI46_08185at 1744.350 kb on + strandat 1744.421 kb on - strandat 1744.426 kb on + strandat 1744.641 kb on + strand, within IAI46_08190at 1744.765 kb on - strand, within IAI46_08190at 1744.986 kb on - strand, within IAI46_08190at 1744.986 kb on - strand, within IAI46_08190at 1744.986 kb on - strand, within IAI46_08190at 1745.041 kb on - strand, within IAI46_08190at 1745.113 kb on + strandat 1745.114 kb on - strandat 1745.114 kb on - strandat 1745.127 kb on - strandat 1745.127 kb on - strandat 1745.282 kb on + strand, within IAI46_08195at 1745.282 kb on + strand, within IAI46_08195at 1745.283 kb on - strand, within IAI46_08195at 1745.283 kb on - strand, within IAI46_08195at 1745.304 kb on - strand, within IAI46_08195at 1745.304 kb on - strand, within IAI46_08195at 1745.478 kb on + strand, within IAI46_08195at 1745.490 kb on + strand, within IAI46_08195at 1745.663 kb on + strandat 1745.664 kb on - strandat 1745.744 kb on + strandat 1745.744 kb on + strandat 1745.772 kb on + strandat 1745.863 kb on + strand, within IAI46_08200at 1745.864 kb on - strand, within IAI46_08200at 1745.941 kb on + strand, within IAI46_08200at 1745.942 kb on - strand, within IAI46_08200at 1746.107 kb on + strand, within IAI46_08200at 1746.108 kb on - strand, within IAI46_08200at 1746.109 kb on + strand, within IAI46_08200at 1746.109 kb on + strand, within IAI46_08200at 1746.109 kb on + strand, within IAI46_08200at 1746.109 kb on + strand, within IAI46_08200at 1746.110 kb on - strand, within IAI46_08200

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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1,743,409 + IAI46_08180 0.64 -2.2
1,743,409 + IAI46_08180 0.64 -2.3
1,743,409 + IAI46_08180 0.64 +0.1
1,743,409 + IAI46_08180 0.64 -0.9
1,743,410 - IAI46_08180 0.64 +0.2
1,743,463 - IAI46_08180 0.73 -2.7
1,743,463 - IAI46_08180 0.73 -4.1
1,743,525 - IAI46_08180 0.83 -0.5
1,743,839 - IAI46_08185 0.28 -3.8
1,743,967 + IAI46_08185 0.44 -0.8
1,743,968 - IAI46_08185 0.44 -4.2
1,743,968 - IAI46_08185 0.44 -3.3
1,744,252 + IAI46_08185 0.81 -0.5
1,744,286 - IAI46_08185 0.85 -3.7
1,744,350 + -1.3
1,744,421 - -1.8
1,744,426 + -2.5
1,744,641 + IAI46_08190 0.35 -1.6
1,744,765 - IAI46_08190 0.52 -2.7
1,744,986 - IAI46_08190 0.82 -4.5
1,744,986 - IAI46_08190 0.82 -1.5
1,744,986 - IAI46_08190 0.82 -3.0
1,745,041 - IAI46_08190 0.89 -3.9
1,745,113 + -3.2
1,745,114 - -1.8
1,745,114 - -0.5
1,745,127 - +0.8
1,745,127 - -2.6
1,745,282 + IAI46_08195 0.27 -0.8
1,745,282 + IAI46_08195 0.27 -2.6
1,745,283 - IAI46_08195 0.27 -2.1
1,745,283 - IAI46_08195 0.27 -2.6
1,745,304 - IAI46_08195 0.30 -3.9
1,745,304 - IAI46_08195 0.30 -2.1
1,745,478 + IAI46_08195 0.60 -2.2
1,745,490 + IAI46_08195 0.62 -3.1
1,745,663 + -1.7
1,745,664 - -1.0
1,745,744 + -1.5
1,745,744 + -1.9
1,745,772 + -1.9
1,745,863 + IAI46_08200 0.14 +0.5
1,745,864 - IAI46_08200 0.14 -0.4
1,745,941 + IAI46_08200 0.21 -2.6
1,745,942 - IAI46_08200 0.21 -2.0
1,746,107 + IAI46_08200 0.37 -1.0
1,746,108 - IAI46_08200 0.37 -2.8
1,746,109 + IAI46_08200 0.37 -0.9
1,746,109 + IAI46_08200 0.37 -4.1
1,746,109 + IAI46_08200 0.37 -1.2
1,746,109 + IAI46_08200 0.37 -2.1
1,746,110 - IAI46_08200 0.37 -1.2

Or see this region's nucleotide sequence