Strain Fitness in Serratia liquefaciens MT49 around IAI46_08060

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08055 and IAI46_08060 are separated by 32 nucleotidesIAI46_08060 and IAI46_08065 overlap by 4 nucleotides IAI46_08055: IAI46_08055 - hypothetical protein, at 1,706,140 to 1,707,474 _08055 IAI46_08060: IAI46_08060 - glycosyltransferase family 4 protein, at 1,707,507 to 1,708,565 _08060 IAI46_08065: IAI46_08065 - glycosyltransferase, at 1,708,562 to 1,709,626 _08065 Position (kb) 1707 1708 1709Strain fitness (log2 ratio) -1 0 1at 1706.881 kb on - strand, within IAI46_08055at 1707.762 kb on - strand, within IAI46_08060at 1708.288 kb on + strand, within IAI46_08060at 1708.346 kb on - strand, within IAI46_08060at 1708.682 kb on + strand, within IAI46_08065at 1708.683 kb on - strand, within IAI46_08065at 1708.856 kb on - strand, within IAI46_08065at 1709.110 kb on + strand, within IAI46_08065at 1709.225 kb on - strand, within IAI46_08065at 1709.245 kb on - strand, within IAI46_08065at 1709.281 kb on - strand, within IAI46_08065at 1709.286 kb on - strand, within IAI46_08065at 1709.407 kb on - strand, within IAI46_08065at 1709.462 kb on - strand, within IAI46_08065at 1709.462 kb on - strand, within IAI46_08065at 1709.509 kb on - strand, within IAI46_08065

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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1,706,881 - IAI46_08055 0.56 +0.1
1,707,762 - IAI46_08060 0.24 +0.7
1,708,288 + IAI46_08060 0.74 -0.4
1,708,346 - IAI46_08060 0.79 +1.3
1,708,682 + IAI46_08065 0.11 -0.5
1,708,683 - IAI46_08065 0.11 -1.3
1,708,856 - IAI46_08065 0.28 +0.7
1,709,110 + IAI46_08065 0.51 +0.5
1,709,225 - IAI46_08065 0.62 -0.5
1,709,245 - IAI46_08065 0.64 +0.8
1,709,281 - IAI46_08065 0.68 -1.0
1,709,286 - IAI46_08065 0.68 -1.2
1,709,407 - IAI46_08065 0.79 -0.8
1,709,462 - IAI46_08065 0.85 -0.8
1,709,462 - IAI46_08065 0.85 +0.8
1,709,509 - IAI46_08065 0.89 -1.1

Or see this region's nucleotide sequence