Strain Fitness in Serratia liquefaciens MT49 around IAI46_07635

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07625 and IAI46_07630 are separated by 140 nucleotidesIAI46_07630 and IAI46_07635 overlap by 4 nucleotidesIAI46_07635 and IAI46_07640 are separated by 531 nucleotides IAI46_07625: IAI46_07625 - hypothetical protein, at 1,609,024 to 1,609,650 _07625 IAI46_07630: IAI46_07630 - heavy metal response regulator transcription factor, at 1,609,791 to 1,610,462 _07630 IAI46_07635: IAI46_07635 - heavy metal sensor histidine kinase, at 1,610,459 to 1,611,883 _07635 IAI46_07640: IAI46_07640 - winged helix-turn-helix domain-containing protein, at 1,612,415 to 1,613,254 _07640 Position (kb) 1610 1611 1612Strain fitness (log2 ratio) -1 0 1 2at 1609.621 kb on + strandat 1609.650 kb on + strandat 1609.650 kb on + strandat 1609.650 kb on + strandat 1609.728 kb on - strandat 1609.728 kb on - strandat 1609.758 kb on + strandat 1609.759 kb on - strandat 1609.761 kb on + strandat 1609.798 kb on + strandat 1609.799 kb on - strandat 1609.799 kb on - strandat 1609.834 kb on - strandat 1609.834 kb on - strandat 1609.864 kb on - strand, within IAI46_07630at 1609.883 kb on + strand, within IAI46_07630at 1609.884 kb on - strand, within IAI46_07630at 1609.945 kb on + strand, within IAI46_07630at 1609.946 kb on - strand, within IAI46_07630at 1610.087 kb on + strand, within IAI46_07630at 1610.087 kb on + strand, within IAI46_07630at 1610.150 kb on - strand, within IAI46_07630at 1610.166 kb on + strand, within IAI46_07630at 1610.167 kb on - strand, within IAI46_07630at 1610.170 kb on + strand, within IAI46_07630at 1610.170 kb on + strand, within IAI46_07630at 1610.170 kb on + strand, within IAI46_07630at 1610.170 kb on + strand, within IAI46_07630at 1610.170 kb on + strand, within IAI46_07630at 1610.171 kb on - strand, within IAI46_07630at 1610.171 kb on - strand, within IAI46_07630at 1610.204 kb on + strand, within IAI46_07630at 1610.252 kb on + strand, within IAI46_07630at 1610.290 kb on + strand, within IAI46_07630at 1610.290 kb on + strand, within IAI46_07630at 1610.290 kb on + strand, within IAI46_07630at 1610.291 kb on - strand, within IAI46_07630at 1610.291 kb on - strand, within IAI46_07630at 1610.568 kb on - strandat 1610.568 kb on - strandat 1610.630 kb on + strand, within IAI46_07635at 1610.630 kb on + strand, within IAI46_07635at 1610.630 kb on + strand, within IAI46_07635at 1610.630 kb on + strand, within IAI46_07635at 1611.197 kb on + strand, within IAI46_07635at 1611.197 kb on + strand, within IAI46_07635at 1611.353 kb on - strand, within IAI46_07635at 1611.379 kb on - strand, within IAI46_07635at 1611.464 kb on + strand, within IAI46_07635at 1611.538 kb on + strand, within IAI46_07635at 1611.538 kb on + strand, within IAI46_07635at 1611.538 kb on + strand, within IAI46_07635at 1611.538 kb on + strand, within IAI46_07635at 1611.539 kb on - strand, within IAI46_07635at 1611.539 kb on - strand, within IAI46_07635at 1611.539 kb on - strand, within IAI46_07635at 1611.539 kb on - strand, within IAI46_07635at 1611.563 kb on - strand, within IAI46_07635at 1611.587 kb on + strand, within IAI46_07635at 1611.588 kb on - strand, within IAI46_07635at 1611.609 kb on + strand, within IAI46_07635at 1611.716 kb on + strand, within IAI46_07635at 1611.882 kb on - strandat 1611.882 kb on - strandat 1611.886 kb on + strandat 1612.087 kb on + strandat 1612.087 kb on + strandat 1612.087 kb on + strandat 1612.088 kb on - strandat 1612.195 kb on - strandat 1612.196 kb on + strandat 1612.219 kb on + strandat 1612.355 kb on + strandat 1612.389 kb on + strandat 1612.533 kb on + strand, within IAI46_07640at 1612.541 kb on - strand, within IAI46_07640at 1612.598 kb on + strand, within IAI46_07640at 1612.598 kb on + strand, within IAI46_07640at 1612.599 kb on - strand, within IAI46_07640at 1612.621 kb on + strand, within IAI46_07640at 1612.621 kb on + strand, within IAI46_07640at 1612.622 kb on - strand, within IAI46_07640at 1612.642 kb on + strand, within IAI46_07640at 1612.732 kb on + strand, within IAI46_07640at 1612.732 kb on + strand, within IAI46_07640at 1612.733 kb on - strand, within IAI46_07640

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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1,609,621 + +0.0
1,609,650 + +0.6
1,609,650 + -0.3
1,609,650 + +1.1
1,609,728 - -0.1
1,609,728 - -0.2
1,609,758 + -0.2
1,609,759 - -0.1
1,609,761 + +0.0
1,609,798 + -0.5
1,609,799 - +0.7
1,609,799 - -0.4
1,609,834 - -0.4
1,609,834 - +0.1
1,609,864 - IAI46_07630 0.11 -0.5
1,609,883 + IAI46_07630 0.14 +0.1
1,609,884 - IAI46_07630 0.14 +0.4
1,609,945 + IAI46_07630 0.23 -0.1
1,609,946 - IAI46_07630 0.23 +0.0
1,610,087 + IAI46_07630 0.44 +0.2
1,610,087 + IAI46_07630 0.44 +0.9
1,610,150 - IAI46_07630 0.53 +0.2
1,610,166 + IAI46_07630 0.56 -0.2
1,610,167 - IAI46_07630 0.56 +0.1
1,610,170 + IAI46_07630 0.56 +1.3
1,610,170 + IAI46_07630 0.56 +0.7
1,610,170 + IAI46_07630 0.56 -0.0
1,610,170 + IAI46_07630 0.56 +1.1
1,610,170 + IAI46_07630 0.56 +1.0
1,610,171 - IAI46_07630 0.57 -0.1
1,610,171 - IAI46_07630 0.57 +0.8
1,610,204 + IAI46_07630 0.61 -1.6
1,610,252 + IAI46_07630 0.69 +0.2
1,610,290 + IAI46_07630 0.74 -0.1
1,610,290 + IAI46_07630 0.74 +0.0
1,610,290 + IAI46_07630 0.74 +0.4
1,610,291 - IAI46_07630 0.74 +0.1
1,610,291 - IAI46_07630 0.74 -1.6
1,610,568 - +0.1
1,610,568 - +0.6
1,610,630 + IAI46_07635 0.12 +0.1
1,610,630 + IAI46_07635 0.12 -0.0
1,610,630 + IAI46_07635 0.12 +0.9
1,610,630 + IAI46_07635 0.12 -0.3
1,611,197 + IAI46_07635 0.52 +0.6
1,611,197 + IAI46_07635 0.52 +0.4
1,611,353 - IAI46_07635 0.63 -0.4
1,611,379 - IAI46_07635 0.65 +1.9
1,611,464 + IAI46_07635 0.71 +0.5
1,611,538 + IAI46_07635 0.76 +0.2
1,611,538 + IAI46_07635 0.76 +0.3
1,611,538 + IAI46_07635 0.76 +0.1
1,611,538 + IAI46_07635 0.76 +0.9
1,611,539 - IAI46_07635 0.76 +0.1
1,611,539 - IAI46_07635 0.76 -0.6
1,611,539 - IAI46_07635 0.76 +1.4
1,611,539 - IAI46_07635 0.76 -0.3
1,611,563 - IAI46_07635 0.77 +0.3
1,611,587 + IAI46_07635 0.79 +0.1
1,611,588 - IAI46_07635 0.79 -0.3
1,611,609 + IAI46_07635 0.81 +0.1
1,611,716 + IAI46_07635 0.88 -0.3
1,611,882 - +1.0
1,611,882 - +0.3
1,611,886 + +0.3
1,612,087 + -0.3
1,612,087 + +1.6
1,612,087 + +0.4
1,612,088 - +0.2
1,612,195 - -0.0
1,612,196 + +0.0
1,612,219 + +0.4
1,612,355 + +0.0
1,612,389 + +0.0
1,612,533 + IAI46_07640 0.14 -0.2
1,612,541 - IAI46_07640 0.15 +0.1
1,612,598 + IAI46_07640 0.22 +0.1
1,612,598 + IAI46_07640 0.22 -0.0
1,612,599 - IAI46_07640 0.22 +0.9
1,612,621 + IAI46_07640 0.25 +0.3
1,612,621 + IAI46_07640 0.25 -0.8
1,612,622 - IAI46_07640 0.25 -0.7
1,612,642 + IAI46_07640 0.27 +1.1
1,612,732 + IAI46_07640 0.38 -1.5
1,612,732 + IAI46_07640 0.38 +0.3
1,612,733 - IAI46_07640 0.38 -0.1

Or see this region's nucleotide sequence