Strain Fitness in Serratia liquefaciens MT49 around IAI46_07615

Experiment: Cobalt chloride 80 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_07610 and IAI46_07615 are separated by 77 nucleotidesIAI46_07615 and IAI46_07620 overlap by 11 nucleotidesIAI46_07620 and IAI46_07625 are separated by 14 nucleotides IAI46_07610: IAI46_07610 - DeoR/GlpR transcriptional regulator, at 1,606,796 to 1,607,566 _07610 IAI46_07615: IAI46_07615 - molybdopterin-dependent oxidoreductase, at 1,607,644 to 1,608,411 _07615 IAI46_07620: IAI46_07620 - cytochrome b/b6 domain-containing protein, at 1,608,401 to 1,609,009 _07620 IAI46_07625: IAI46_07625 - hypothetical protein, at 1,609,024 to 1,609,650 _07625 Position (kb) 1607 1608 1609Strain fitness (log2 ratio) -2 -1 0 1at 1606.720 kb on - strandat 1606.800 kb on + strandat 1606.801 kb on - strandat 1606.806 kb on + strandat 1606.806 kb on + strandat 1606.807 kb on - strandat 1606.807 kb on - strandat 1606.894 kb on + strand, within IAI46_07610at 1606.894 kb on + strand, within IAI46_07610at 1606.895 kb on - strand, within IAI46_07610at 1607.018 kb on + strand, within IAI46_07610at 1607.018 kb on + strand, within IAI46_07610at 1607.018 kb on + strand, within IAI46_07610at 1607.018 kb on + strand, within IAI46_07610at 1607.019 kb on - strand, within IAI46_07610at 1607.019 kb on - strand, within IAI46_07610at 1607.019 kb on - strand, within IAI46_07610at 1607.104 kb on + strand, within IAI46_07610at 1607.104 kb on + strand, within IAI46_07610at 1607.188 kb on - strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.277 kb on + strand, within IAI46_07610at 1607.305 kb on + strand, within IAI46_07610at 1607.356 kb on + strand, within IAI46_07610at 1607.402 kb on - strand, within IAI46_07610at 1607.436 kb on + strand, within IAI46_07610at 1607.436 kb on + strand, within IAI46_07610at 1607.436 kb on + strand, within IAI46_07610at 1607.437 kb on - strand, within IAI46_07610at 1607.444 kb on + strand, within IAI46_07610at 1607.444 kb on + strand, within IAI46_07610at 1607.444 kb on + strand, within IAI46_07610at 1607.479 kb on + strand, within IAI46_07610at 1607.480 kb on - strand, within IAI46_07610at 1607.480 kb on - strand, within IAI46_07610at 1607.482 kb on + strand, within IAI46_07610at 1607.570 kb on + strandat 1607.570 kb on + strandat 1607.571 kb on - strandat 1607.578 kb on + strandat 1607.578 kb on + strandat 1607.579 kb on - strandat 1607.579 kb on - strandat 1607.581 kb on + strandat 1607.595 kb on + strandat 1607.595 kb on + strandat 1607.646 kb on - strandat 1607.664 kb on + strandat 1607.665 kb on - strandat 1607.665 kb on - strandat 1607.867 kb on + strand, within IAI46_07615at 1607.868 kb on - strand, within IAI46_07615at 1608.087 kb on - strand, within IAI46_07615at 1608.116 kb on + strand, within IAI46_07615at 1608.117 kb on - strand, within IAI46_07615at 1608.117 kb on - strand, within IAI46_07615at 1608.128 kb on + strand, within IAI46_07615at 1608.128 kb on + strand, within IAI46_07615at 1608.129 kb on - strand, within IAI46_07615at 1608.129 kb on - strand, within IAI46_07615at 1608.153 kb on + strand, within IAI46_07615at 1608.170 kb on + strand, within IAI46_07615at 1608.171 kb on - strand, within IAI46_07615at 1608.345 kb on + strandat 1608.485 kb on + strand, within IAI46_07620at 1608.485 kb on + strand, within IAI46_07620at 1608.485 kb on + strand, within IAI46_07620at 1608.486 kb on - strand, within IAI46_07620at 1608.486 kb on - strand, within IAI46_07620at 1608.633 kb on + strand, within IAI46_07620at 1608.634 kb on - strand, within IAI46_07620at 1608.657 kb on + strand, within IAI46_07620at 1608.657 kb on + strand, within IAI46_07620at 1608.658 kb on - strand, within IAI46_07620at 1608.781 kb on - strand, within IAI46_07620at 1608.781 kb on - strand, within IAI46_07620at 1608.781 kb on - strand, within IAI46_07620at 1608.904 kb on - strand, within IAI46_07620at 1608.950 kb on - strandat 1609.026 kb on - strandat 1609.026 kb on - strandat 1609.026 kb on - strandat 1609.026 kb on - strandat 1609.086 kb on + strandat 1609.114 kb on - strand, within IAI46_07625

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
remove
1,606,720 - +1.4
1,606,800 + +0.6
1,606,801 - +0.3
1,606,806 + +0.9
1,606,806 + +0.4
1,606,807 - -0.3
1,606,807 - -0.5
1,606,894 + IAI46_07610 0.13 -0.5
1,606,894 + IAI46_07610 0.13 +0.9
1,606,895 - IAI46_07610 0.13 -0.4
1,607,018 + IAI46_07610 0.29 -0.1
1,607,018 + IAI46_07610 0.29 -0.4
1,607,018 + IAI46_07610 0.29 +0.0
1,607,018 + IAI46_07610 0.29 +0.3
1,607,019 - IAI46_07610 0.29 -0.9
1,607,019 - IAI46_07610 0.29 +0.1
1,607,019 - IAI46_07610 0.29 -0.5
1,607,104 + IAI46_07610 0.40 +0.4
1,607,104 + IAI46_07610 0.40 +0.3
1,607,188 - IAI46_07610 0.51 -0.5
1,607,277 + IAI46_07610 0.62 -1.9
1,607,277 + IAI46_07610 0.62 +1.4
1,607,277 + IAI46_07610 0.62 +0.4
1,607,277 + IAI46_07610 0.62 +0.4
1,607,277 + IAI46_07610 0.62 -0.5
1,607,277 + IAI46_07610 0.62 +0.7
1,607,277 + IAI46_07610 0.62 +0.1
1,607,277 + IAI46_07610 0.62 +0.6
1,607,305 + IAI46_07610 0.66 +0.2
1,607,356 + IAI46_07610 0.73 +0.1
1,607,402 - IAI46_07610 0.79 -0.0
1,607,436 + IAI46_07610 0.83 +1.4
1,607,436 + IAI46_07610 0.83 +0.7
1,607,436 + IAI46_07610 0.83 -0.6
1,607,437 - IAI46_07610 0.83 -0.3
1,607,444 + IAI46_07610 0.84 +1.1
1,607,444 + IAI46_07610 0.84 +0.5
1,607,444 + IAI46_07610 0.84 -1.0
1,607,479 + IAI46_07610 0.89 -0.1
1,607,480 - IAI46_07610 0.89 -0.9
1,607,480 - IAI46_07610 0.89 -0.3
1,607,482 + IAI46_07610 0.89 -0.6
1,607,570 + +0.5
1,607,570 + -0.7
1,607,571 - -0.4
1,607,578 + +1.3
1,607,578 + +1.0
1,607,579 - -0.2
1,607,579 - -0.6
1,607,581 + -0.7
1,607,595 + +0.3
1,607,595 + +0.2
1,607,646 - +0.9
1,607,664 + +0.8
1,607,665 - -0.5
1,607,665 - +0.3
1,607,867 + IAI46_07615 0.29 +0.4
1,607,868 - IAI46_07615 0.29 +0.8
1,608,087 - IAI46_07615 0.58 +0.3
1,608,116 + IAI46_07615 0.61 +0.2
1,608,117 - IAI46_07615 0.62 +0.4
1,608,117 - IAI46_07615 0.62 +0.3
1,608,128 + IAI46_07615 0.63 +1.2
1,608,128 + IAI46_07615 0.63 +0.9
1,608,129 - IAI46_07615 0.63 +0.4
1,608,129 - IAI46_07615 0.63 +0.3
1,608,153 + IAI46_07615 0.66 -0.3
1,608,170 + IAI46_07615 0.68 +1.1
1,608,171 - IAI46_07615 0.69 +0.0
1,608,345 + +0.3
1,608,485 + IAI46_07620 0.14 +0.1
1,608,485 + IAI46_07620 0.14 +0.2
1,608,485 + IAI46_07620 0.14 +1.4
1,608,486 - IAI46_07620 0.14 +0.4
1,608,486 - IAI46_07620 0.14 +0.6
1,608,633 + IAI46_07620 0.38 +1.1
1,608,634 - IAI46_07620 0.38 +0.2
1,608,657 + IAI46_07620 0.42 +0.5
1,608,657 + IAI46_07620 0.42 -0.5
1,608,658 - IAI46_07620 0.42 -0.3
1,608,781 - IAI46_07620 0.62 +1.4
1,608,781 - IAI46_07620 0.62 +0.2
1,608,781 - IAI46_07620 0.62 -0.1
1,608,904 - IAI46_07620 0.83 +0.9
1,608,950 - -0.1
1,609,026 - +0.1
1,609,026 - +0.5
1,609,026 - +1.1
1,609,026 - +0.3
1,609,086 + -0.7
1,609,114 - IAI46_07625 0.14 -0.9

Or see this region's nucleotide sequence