Strain Fitness in Serratia liquefaciens MT49 around IAI46_06825

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06820 and IAI46_06825 are separated by 35 nucleotidesIAI46_06825 and IAI46_06830 are separated by 82 nucleotidesIAI46_06830 and IAI46_06835 are separated by 65 nucleotides IAI46_06820: IAI46_06820 - D-alanyl-D-alanine endopeptidase, at 1,447,809 to 1,448,738 _06820 IAI46_06825: IAI46_06825 - GNAT family N-acetyltransferase, at 1,448,774 to 1,449,229 _06825 IAI46_06830: IAI46_06830 - VOC family protein, at 1,449,312 to 1,449,716 _06830 IAI46_06835: IAI46_06835 - two-component sensor histidine kinase, at 1,449,782 to 1,451,101 _06835 Position (kb) 1448 1449 1450Strain fitness (log2 ratio) -2 -1 0 1 2at 1447.807 kb on + strandat 1447.808 kb on - strandat 1447.837 kb on + strandat 1447.838 kb on - strandat 1447.958 kb on + strand, within IAI46_06820at 1447.959 kb on - strand, within IAI46_06820at 1447.980 kb on + strand, within IAI46_06820at 1447.981 kb on - strand, within IAI46_06820at 1447.981 kb on - strand, within IAI46_06820at 1447.981 kb on - strand, within IAI46_06820at 1448.122 kb on - strand, within IAI46_06820at 1448.131 kb on + strand, within IAI46_06820at 1448.162 kb on + strand, within IAI46_06820at 1448.162 kb on + strand, within IAI46_06820at 1448.163 kb on - strand, within IAI46_06820at 1448.246 kb on + strand, within IAI46_06820at 1448.298 kb on + strand, within IAI46_06820at 1448.298 kb on + strand, within IAI46_06820at 1448.299 kb on - strand, within IAI46_06820at 1448.299 kb on - strand, within IAI46_06820at 1448.442 kb on + strand, within IAI46_06820at 1448.442 kb on + strand, within IAI46_06820at 1448.443 kb on - strand, within IAI46_06820at 1448.444 kb on + strand, within IAI46_06820at 1448.445 kb on - strand, within IAI46_06820at 1448.445 kb on - strand, within IAI46_06820at 1448.463 kb on - strand, within IAI46_06820at 1448.476 kb on + strand, within IAI46_06820at 1448.476 kb on + strand, within IAI46_06820at 1448.477 kb on - strand, within IAI46_06820at 1448.478 kb on + strand, within IAI46_06820at 1448.478 kb on + strand, within IAI46_06820at 1448.479 kb on - strand, within IAI46_06820at 1448.479 kb on - strand, within IAI46_06820at 1448.479 kb on - strand, within IAI46_06820at 1448.607 kb on + strand, within IAI46_06820at 1448.607 kb on + strand, within IAI46_06820at 1448.607 kb on + strand, within IAI46_06820at 1448.607 kb on + strand, within IAI46_06820at 1448.607 kb on + strand, within IAI46_06820at 1448.607 kb on + strand, within IAI46_06820at 1448.607 kb on + strand, within IAI46_06820at 1448.608 kb on - strand, within IAI46_06820at 1448.691 kb on + strandat 1448.841 kb on + strand, within IAI46_06825at 1448.842 kb on - strand, within IAI46_06825at 1448.842 kb on - strand, within IAI46_06825at 1448.892 kb on + strand, within IAI46_06825at 1448.893 kb on - strand, within IAI46_06825at 1448.926 kb on - strand, within IAI46_06825at 1448.947 kb on + strand, within IAI46_06825at 1448.947 kb on + strand, within IAI46_06825at 1448.947 kb on + strand, within IAI46_06825at 1448.948 kb on - strand, within IAI46_06825at 1448.948 kb on - strand, within IAI46_06825at 1448.948 kb on - strand, within IAI46_06825at 1448.948 kb on - strand, within IAI46_06825at 1449.119 kb on - strand, within IAI46_06825at 1449.161 kb on + strand, within IAI46_06825at 1449.171 kb on + strand, within IAI46_06825at 1449.172 kb on - strand, within IAI46_06825at 1449.229 kb on + strandat 1449.230 kb on - strandat 1449.230 kb on - strandat 1449.259 kb on + strandat 1449.259 kb on + strandat 1449.260 kb on - strandat 1449.280 kb on + strandat 1449.280 kb on + strandat 1449.283 kb on + strandat 1449.284 kb on - strandat 1449.288 kb on + strandat 1449.364 kb on + strand, within IAI46_06830at 1449.375 kb on - strand, within IAI46_06830at 1449.459 kb on - strand, within IAI46_06830at 1449.479 kb on + strand, within IAI46_06830at 1449.480 kb on - strand, within IAI46_06830at 1449.480 kb on - strand, within IAI46_06830at 1449.480 kb on - strand, within IAI46_06830at 1449.492 kb on - strand, within IAI46_06830at 1449.614 kb on + strand, within IAI46_06830at 1449.614 kb on + strand, within IAI46_06830at 1449.615 kb on - strand, within IAI46_06830at 1449.615 kb on - strand, within IAI46_06830at 1449.615 kb on - strand, within IAI46_06830at 1449.631 kb on - strand, within IAI46_06830at 1449.720 kb on - strandat 1449.738 kb on - strandat 1449.738 kb on - strandat 1449.738 kb on - strandat 1449.743 kb on - strandat 1449.743 kb on - strandat 1449.746 kb on + strandat 1449.746 kb on + strandat 1449.747 kb on - strandat 1449.781 kb on + strandat 1449.781 kb on + strandat 1449.781 kb on + strandat 1449.781 kb on + strandat 1449.782 kb on - strandat 1449.782 kb on - strandat 1449.782 kb on - strandat 1449.860 kb on + strandat 1449.943 kb on - strand, within IAI46_06835at 1450.018 kb on + strand, within IAI46_06835at 1450.155 kb on + strand, within IAI46_06835at 1450.176 kb on + strand, within IAI46_06835at 1450.176 kb on + strand, within IAI46_06835at 1450.177 kb on - strand, within IAI46_06835at 1450.177 kb on - strand, within IAI46_06835at 1450.206 kb on - strand, within IAI46_06835at 1450.208 kb on + strand, within IAI46_06835at 1450.209 kb on - strand, within IAI46_06835at 1450.209 kb on - strand, within IAI46_06835at 1450.209 kb on - strand, within IAI46_06835at 1450.209 kb on - strand, within IAI46_06835at 1450.209 kb on - strand, within IAI46_06835

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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1,447,807 + -0.1
1,447,808 - -0.1
1,447,837 + -1.7
1,447,838 - -1.3
1,447,958 + IAI46_06820 0.16 -0.1
1,447,959 - IAI46_06820 0.16 -0.3
1,447,980 + IAI46_06820 0.18 -0.6
1,447,981 - IAI46_06820 0.18 +0.6
1,447,981 - IAI46_06820 0.18 +0.2
1,447,981 - IAI46_06820 0.18 +0.5
1,448,122 - IAI46_06820 0.34 -0.3
1,448,131 + IAI46_06820 0.35 +0.5
1,448,162 + IAI46_06820 0.38 +0.5
1,448,162 + IAI46_06820 0.38 -0.1
1,448,163 - IAI46_06820 0.38 +0.2
1,448,246 + IAI46_06820 0.47 -0.6
1,448,298 + IAI46_06820 0.53 +0.2
1,448,298 + IAI46_06820 0.53 -0.3
1,448,299 - IAI46_06820 0.53 -0.9
1,448,299 - IAI46_06820 0.53 +0.3
1,448,442 + IAI46_06820 0.68 +1.9
1,448,442 + IAI46_06820 0.68 -0.2
1,448,443 - IAI46_06820 0.68 -1.8
1,448,444 + IAI46_06820 0.68 +0.0
1,448,445 - IAI46_06820 0.68 -0.1
1,448,445 - IAI46_06820 0.68 +0.1
1,448,463 - IAI46_06820 0.70 +0.2
1,448,476 + IAI46_06820 0.72 -0.1
1,448,476 + IAI46_06820 0.72 +0.2
1,448,477 - IAI46_06820 0.72 -0.1
1,448,478 + IAI46_06820 0.72 -0.2
1,448,478 + IAI46_06820 0.72 -0.2
1,448,479 - IAI46_06820 0.72 +1.9
1,448,479 - IAI46_06820 0.72 -1.1
1,448,479 - IAI46_06820 0.72 -1.9
1,448,607 + IAI46_06820 0.86 -0.2
1,448,607 + IAI46_06820 0.86 +0.3
1,448,607 + IAI46_06820 0.86 +0.2
1,448,607 + IAI46_06820 0.86 +0.0
1,448,607 + IAI46_06820 0.86 +0.4
1,448,607 + IAI46_06820 0.86 +0.4
1,448,607 + IAI46_06820 0.86 -0.4
1,448,608 - IAI46_06820 0.86 +1.1
1,448,691 + +0.9
1,448,841 + IAI46_06825 0.15 -0.8
1,448,842 - IAI46_06825 0.15 -0.4
1,448,842 - IAI46_06825 0.15 +0.7
1,448,892 + IAI46_06825 0.26 +0.1
1,448,893 - IAI46_06825 0.26 -0.1
1,448,926 - IAI46_06825 0.33 +0.5
1,448,947 + IAI46_06825 0.38 +0.4
1,448,947 + IAI46_06825 0.38 +0.9
1,448,947 + IAI46_06825 0.38 +0.9
1,448,948 - IAI46_06825 0.38 +0.0
1,448,948 - IAI46_06825 0.38 -0.9
1,448,948 - IAI46_06825 0.38 -0.6
1,448,948 - IAI46_06825 0.38 -0.3
1,449,119 - IAI46_06825 0.76 +0.6
1,449,161 + IAI46_06825 0.85 +0.2
1,449,171 + IAI46_06825 0.87 -0.4
1,449,172 - IAI46_06825 0.87 -0.0
1,449,229 + +0.2
1,449,230 - +0.5
1,449,230 - +1.9
1,449,259 + -0.4
1,449,259 + +0.5
1,449,260 - +0.8
1,449,280 + -0.1
1,449,280 + +0.9
1,449,283 + +0.0
1,449,284 - -0.1
1,449,288 + +0.1
1,449,364 + IAI46_06830 0.13 -0.0
1,449,375 - IAI46_06830 0.16 -1.0
1,449,459 - IAI46_06830 0.36 -0.8
1,449,479 + IAI46_06830 0.41 +0.6
1,449,480 - IAI46_06830 0.41 -1.0
1,449,480 - IAI46_06830 0.41 -0.1
1,449,480 - IAI46_06830 0.41 -2.0
1,449,492 - IAI46_06830 0.44 -0.2
1,449,614 + IAI46_06830 0.75 -0.1
1,449,614 + IAI46_06830 0.75 +0.5
1,449,615 - IAI46_06830 0.75 +0.2
1,449,615 - IAI46_06830 0.75 -1.5
1,449,615 - IAI46_06830 0.75 +0.2
1,449,631 - IAI46_06830 0.79 -0.1
1,449,720 - +1.0
1,449,738 - +0.2
1,449,738 - -1.6
1,449,738 - +0.1
1,449,743 - -0.6
1,449,743 - +0.0
1,449,746 + +1.1
1,449,746 + +0.5
1,449,747 - +0.0
1,449,781 + +0.2
1,449,781 + -1.5
1,449,781 + +1.0
1,449,781 + +0.3
1,449,782 - -1.2
1,449,782 - +0.3
1,449,782 - -0.6
1,449,860 + +0.3
1,449,943 - IAI46_06835 0.12 +0.1
1,450,018 + IAI46_06835 0.18 +0.6
1,450,155 + IAI46_06835 0.28 -0.2
1,450,176 + IAI46_06835 0.30 -1.6
1,450,176 + IAI46_06835 0.30 -1.6
1,450,177 - IAI46_06835 0.30 -0.4
1,450,177 - IAI46_06835 0.30 +0.7
1,450,206 - IAI46_06835 0.32 +0.1
1,450,208 + IAI46_06835 0.32 +0.0
1,450,209 - IAI46_06835 0.32 -1.5
1,450,209 - IAI46_06835 0.32 +1.1
1,450,209 - IAI46_06835 0.32 +0.2
1,450,209 - IAI46_06835 0.32 +0.5
1,450,209 - IAI46_06835 0.32 -0.2

Or see this region's nucleotide sequence