Strain Fitness in Serratia liquefaciens MT49 around IAI46_06215

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06205 and IAI46_06210 are separated by 18 nucleotidesIAI46_06210 and IAI46_06215 are separated by 152 nucleotidesIAI46_06215 and IAI46_06220 overlap by 7 nucleotidesIAI46_06220 and IAI46_06225 overlap by 11 nucleotides IAI46_06205: IAI46_06205 - 3',5'-cyclic-nucleotide phosphodiesterase, at 1,328,988 to 1,329,968 _06205 IAI46_06210: IAI46_06210 - type 2 GTP cyclohydrolase I, at 1,329,987 to 1,330,730 _06210 IAI46_06215: IAI46_06215 - 5-oxoprolinase subunit PxpB, at 1,330,883 to 1,331,539 _06215 IAI46_06220: IAI46_06220 - biotin-dependent carboxyltransferase family protein, at 1,331,533 to 1,332,465 _06220 IAI46_06225: IAI46_06225 - 5-oxoprolinase subunit PxpA, at 1,332,455 to 1,333,192 _06225 Position (kb) 1330 1331 1332Strain fitness (log2 ratio) -1 0 1at 1329.932 kb on + strandat 1330.058 kb on + strandat 1330.058 kb on + strandat 1330.171 kb on + strand, within IAI46_06210at 1330.171 kb on + strand, within IAI46_06210at 1330.183 kb on - strand, within IAI46_06210at 1330.210 kb on + strand, within IAI46_06210at 1330.211 kb on - strand, within IAI46_06210at 1330.256 kb on + strand, within IAI46_06210at 1330.256 kb on + strand, within IAI46_06210at 1330.267 kb on - strand, within IAI46_06210at 1330.273 kb on - strand, within IAI46_06210at 1330.273 kb on - strand, within IAI46_06210at 1330.422 kb on - strand, within IAI46_06210at 1330.422 kb on - strand, within IAI46_06210at 1330.447 kb on + strand, within IAI46_06210at 1330.521 kb on - strand, within IAI46_06210at 1330.706 kb on + strandat 1330.778 kb on + strandat 1330.815 kb on - strandat 1330.867 kb on + strandat 1330.901 kb on + strandat 1330.902 kb on - strandat 1330.909 kb on - strandat 1330.909 kb on - strandat 1331.041 kb on + strand, within IAI46_06215at 1331.042 kb on - strand, within IAI46_06215at 1331.042 kb on - strand, within IAI46_06215at 1331.229 kb on + strand, within IAI46_06215at 1331.255 kb on + strand, within IAI46_06215at 1331.255 kb on + strand, within IAI46_06215at 1331.255 kb on + strand, within IAI46_06215at 1331.256 kb on - strand, within IAI46_06215at 1331.259 kb on + strand, within IAI46_06215at 1331.260 kb on - strand, within IAI46_06215at 1331.260 kb on - strand, within IAI46_06215at 1331.265 kb on - strand, within IAI46_06215at 1331.265 kb on - strand, within IAI46_06215at 1331.294 kb on + strand, within IAI46_06215at 1331.295 kb on - strand, within IAI46_06215at 1331.295 kb on - strand, within IAI46_06215at 1331.465 kb on + strand, within IAI46_06215at 1331.532 kb on + strandat 1331.532 kb on + strandat 1331.532 kb on + strandat 1331.532 kb on + strandat 1331.560 kb on + strandat 1331.673 kb on + strand, within IAI46_06220at 1331.866 kb on + strand, within IAI46_06220at 1331.866 kb on + strand, within IAI46_06220at 1331.866 kb on + strand, within IAI46_06220at 1331.958 kb on + strand, within IAI46_06220at 1331.959 kb on - strand, within IAI46_06220at 1332.249 kb on + strand, within IAI46_06220at 1332.261 kb on + strand, within IAI46_06220at 1332.288 kb on + strand, within IAI46_06220at 1332.288 kb on + strand, within IAI46_06220at 1332.334 kb on + strand, within IAI46_06220at 1332.335 kb on - strand, within IAI46_06220

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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1,329,932 + +0.5
1,330,058 + +0.8
1,330,058 + -0.3
1,330,171 + IAI46_06210 0.25 -0.2
1,330,171 + IAI46_06210 0.25 -1.6
1,330,183 - IAI46_06210 0.26 -0.6
1,330,210 + IAI46_06210 0.30 +0.1
1,330,211 - IAI46_06210 0.30 -0.1
1,330,256 + IAI46_06210 0.36 +0.1
1,330,256 + IAI46_06210 0.36 +0.0
1,330,267 - IAI46_06210 0.38 -0.8
1,330,273 - IAI46_06210 0.38 +0.5
1,330,273 - IAI46_06210 0.38 +0.5
1,330,422 - IAI46_06210 0.58 +0.6
1,330,422 - IAI46_06210 0.58 -0.1
1,330,447 + IAI46_06210 0.62 +1.0
1,330,521 - IAI46_06210 0.72 +0.1
1,330,706 + +1.0
1,330,778 + +1.3
1,330,815 - -0.1
1,330,867 + -0.6
1,330,901 + -0.1
1,330,902 - -1.0
1,330,909 - +0.3
1,330,909 - -0.7
1,331,041 + IAI46_06215 0.24 -0.1
1,331,042 - IAI46_06215 0.24 +0.4
1,331,042 - IAI46_06215 0.24 +0.2
1,331,229 + IAI46_06215 0.53 +0.0
1,331,255 + IAI46_06215 0.57 +0.0
1,331,255 + IAI46_06215 0.57 +1.6
1,331,255 + IAI46_06215 0.57 -0.3
1,331,256 - IAI46_06215 0.57 +0.2
1,331,259 + IAI46_06215 0.57 +0.9
1,331,260 - IAI46_06215 0.57 -0.4
1,331,260 - IAI46_06215 0.57 +0.9
1,331,265 - IAI46_06215 0.58 +1.4
1,331,265 - IAI46_06215 0.58 +0.8
1,331,294 + IAI46_06215 0.63 -0.2
1,331,295 - IAI46_06215 0.63 +0.1
1,331,295 - IAI46_06215 0.63 +0.2
1,331,465 + IAI46_06215 0.89 +0.4
1,331,532 + +0.2
1,331,532 + -0.7
1,331,532 + +0.1
1,331,532 + -0.3
1,331,560 + +0.7
1,331,673 + IAI46_06220 0.15 -0.4
1,331,866 + IAI46_06220 0.36 -1.4
1,331,866 + IAI46_06220 0.36 -0.1
1,331,866 + IAI46_06220 0.36 +0.7
1,331,958 + IAI46_06220 0.46 +0.0
1,331,959 - IAI46_06220 0.46 +0.6
1,332,249 + IAI46_06220 0.77 +0.0
1,332,261 + IAI46_06220 0.78 +0.2
1,332,288 + IAI46_06220 0.81 -0.1
1,332,288 + IAI46_06220 0.81 -0.5
1,332,334 + IAI46_06220 0.86 -0.4
1,332,335 - IAI46_06220 0.86 -0.5

Or see this region's nucleotide sequence