Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_05900 and IAI46_05905 overlap by 8 nucleotides IAI46_05905 and IAI46_05910 are separated by 258 nucleotides IAI46_05910 and IAI46_05915 are separated by 111 nucleotides
IAI46_05900: IAI46_05900 - lipoyl synthase, at 1,264,722 to 1,265,687
_05900
IAI46_05905: IAI46_05905 - lipoyl(octanoyl) transferase LipB, at 1,265,680 to 1,266,348
_05905
IAI46_05910: IAI46_05910 - YbeD family protein, at 1,266,607 to 1,266,870
_05910
IAI46_05915: IAI46_05915 - D-alanyl-D-alanine carboxypeptidase DacA, at 1,266,982 to 1,268,193
_05915
Position (kb)
1265
1266
1267 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1265.768 kb on - strand, within IAI46_05905 at 1265.844 kb on + strand, within IAI46_05905 at 1265.845 kb on - strand, within IAI46_05905 at 1265.951 kb on + strand, within IAI46_05905 at 1266.010 kb on - strand, within IAI46_05905 at 1266.019 kb on - strand, within IAI46_05905 at 1266.084 kb on - strand, within IAI46_05905 at 1266.084 kb on - strand, within IAI46_05905 at 1266.111 kb on - strand, within IAI46_05905 at 1266.111 kb on - strand, within IAI46_05905 at 1266.409 kb on + strand at 1266.410 kb on - strand at 1266.411 kb on + strand at 1266.472 kb on + strand at 1266.476 kb on + strand at 1266.476 kb on + strand at 1266.476 kb on + strand at 1266.899 kb on - strand at 1266.910 kb on - strand at 1266.915 kb on - strand at 1266.915 kb on - strand at 1266.939 kb on - strand at 1266.952 kb on - strand at 1266.952 kb on - strand at 1266.953 kb on + strand at 1266.953 kb on + strand at 1266.954 kb on - strand at 1267.017 kb on - strand at 1267.067 kb on - strand at 1267.232 kb on - strand, within IAI46_05915
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 1,265,768 - IAI46_05905 0.13 +2.2 1,265,844 + IAI46_05905 0.25 +1.0 1,265,845 - IAI46_05905 0.25 -0.8 1,265,951 + IAI46_05905 0.41 +1.0 1,266,010 - IAI46_05905 0.49 +1.1 1,266,019 - IAI46_05905 0.51 +0.7 1,266,084 - IAI46_05905 0.60 +2.0 1,266,084 - IAI46_05905 0.60 +1.0 1,266,111 - IAI46_05905 0.64 -0.1 1,266,111 - IAI46_05905 0.64 -0.8 1,266,409 + +0.9 1,266,410 - +0.4 1,266,411 + +0.3 1,266,472 + -0.1 1,266,476 + -1.0 1,266,476 + +0.3 1,266,476 + +1.0 1,266,899 - +1.5 1,266,910 - +0.6 1,266,915 - +0.3 1,266,915 - -0.1 1,266,939 - -0.4 1,266,952 - +0.3 1,266,952 - +0.6 1,266,953 + +0.6 1,266,953 + +1.9 1,266,954 - -0.1 1,267,017 - -1.2 1,267,067 - -0.6 1,267,232 - IAI46_05915 0.21 -2.4
Or see this region's nucleotide sequence