Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_04650 and IAI46_04655 are separated by 115 nucleotides IAI46_04655 and IAI46_04660 are separated by 173 nucleotides IAI46_04660 and IAI46_04665 are separated by 82 nucleotides IAI46_04665 and IAI46_04670 overlap by 44 nucleotides
IAI46_04650: IAI46_04650 - GNAT family N-acetyltransferase, at 998,084 to 998,602
_04650
IAI46_04655: IAI46_04655 - shikimate kinase AroL, at 998,718 to 999,242
_04655
IAI46_04660: IAI46_04660 - aldo/keto reductase, at 999,416 to 1,000,462
_04660
IAI46_04665: IAI46_04665 - TetR/AcrR family transcriptional regulator, at 1,000,545 to 1,001,132
_04665
IAI46_04670: IAI46_04670 - helix-turn-helix transcriptional regulator, at 1,001,089 to 1,001,850
_04670
Position (kb) 999
1000
1001 Strain fitness (log2 ratio) -2
-1
0
1
2 at 998.469 kb on - strand, within IAI46_04650 at 998.469 kb on - strand, within IAI46_04650 at 998.469 kb on - strand, within IAI46_04650 at 998.590 kb on + strand at 998.600 kb on + strand at 998.600 kb on + strand at 998.601 kb on - strand at 998.605 kb on - strand at 998.642 kb on + strand at 998.700 kb on + strand at 998.700 kb on + strand at 998.701 kb on - strand at 998.701 kb on - strand at 998.701 kb on - strand at 998.701 kb on - strand at 998.702 kb on + strand at 998.702 kb on + strand at 998.703 kb on - strand at 998.703 kb on - strand at 998.799 kb on + strand, within IAI46_04655 at 998.799 kb on + strand, within IAI46_04655 at 998.938 kb on + strand, within IAI46_04655 at 998.938 kb on + strand, within IAI46_04655 at 998.939 kb on - strand, within IAI46_04655 at 998.988 kb on - strand, within IAI46_04655 at 999.012 kb on + strand, within IAI46_04655 at 999.013 kb on - strand, within IAI46_04655 at 999.162 kb on + strand, within IAI46_04655 at 999.163 kb on - strand, within IAI46_04655 at 999.217 kb on + strand at 999.217 kb on + strand at 999.240 kb on + strand at 999.240 kb on + strand at 999.241 kb on - strand at 999.290 kb on + strand at 999.398 kb on + strand at 999.398 kb on + strand at 999.399 kb on - strand at 999.399 kb on - strand at 999.423 kb on - strand at 999.423 kb on - strand at 999.423 kb on - strand at 999.545 kb on + strand, within IAI46_04660 at 999.583 kb on + strand, within IAI46_04660 at 999.587 kb on + strand, within IAI46_04660 at 999.588 kb on - strand, within IAI46_04660 at 999.615 kb on + strand, within IAI46_04660 at 999.626 kb on - strand, within IAI46_04660 at 999.666 kb on - strand, within IAI46_04660 at 999.666 kb on - strand, within IAI46_04660 at 999.666 kb on - strand, within IAI46_04660 at 999.701 kb on + strand, within IAI46_04660 at 999.702 kb on - strand, within IAI46_04660 at 999.702 kb on - strand, within IAI46_04660 at 999.702 kb on - strand, within IAI46_04660 at 999.738 kb on + strand, within IAI46_04660 at 999.772 kb on + strand, within IAI46_04660 at 999.869 kb on + strand, within IAI46_04660 at 999.869 kb on + strand, within IAI46_04660 at 999.916 kb on + strand, within IAI46_04660 at 999.917 kb on - strand, within IAI46_04660 at 999.955 kb on + strand, within IAI46_04660 at 999.956 kb on - strand, within IAI46_04660 at 999.957 kb on + strand, within IAI46_04660 at 999.958 kb on - strand, within IAI46_04660 at 999.958 kb on - strand, within IAI46_04660 at 999.958 kb on - strand, within IAI46_04660 at 999.958 kb on - strand, within IAI46_04660 at 999.958 kb on - strand, within IAI46_04660 at 999.968 kb on + strand, within IAI46_04660 at 999.968 kb on + strand, within IAI46_04660 at 999.978 kb on + strand, within IAI46_04660 at 999.978 kb on + strand, within IAI46_04660 at 1000.079 kb on + strand, within IAI46_04660 at 1000.287 kb on + strand, within IAI46_04660 at 1000.294 kb on + strand, within IAI46_04660 at 1000.295 kb on - strand, within IAI46_04660 at 1000.295 kb on - strand, within IAI46_04660 at 1000.296 kb on - strand, within IAI46_04660 at 1000.486 kb on + strand at 1000.487 kb on - strand at 1000.511 kb on + strand at 1000.511 kb on + strand at 1000.512 kb on - strand at 1000.512 kb on - strand at 1000.512 kb on - strand at 1000.512 kb on - strand at 1000.530 kb on + strand at 1000.531 kb on - strand at 1000.531 kb on - strand at 1000.666 kb on + strand, within IAI46_04665 at 1000.689 kb on + strand, within IAI46_04665 at 1000.689 kb on + strand, within IAI46_04665 at 1000.689 kb on + strand, within IAI46_04665 at 1000.690 kb on - strand, within IAI46_04665 at 1000.690 kb on - strand, within IAI46_04665 at 1000.690 kb on - strand, within IAI46_04665 at 1000.690 kb on - strand, within IAI46_04665 at 1000.801 kb on + strand, within IAI46_04665 at 1000.821 kb on + strand, within IAI46_04665 at 1000.822 kb on - strand, within IAI46_04665 at 1000.822 kb on - strand, within IAI46_04665 at 1000.926 kb on + strand, within IAI46_04665 at 1000.927 kb on - strand, within IAI46_04665 at 1001.131 kb on - strand at 1001.135 kb on + strand at 1001.178 kb on + strand, within IAI46_04670 at 1001.179 kb on - strand, within IAI46_04670 at 1001.179 kb on - strand, within IAI46_04670 at 1001.179 kb on - strand, within IAI46_04670 at 1001.180 kb on + strand, within IAI46_04670 at 1001.180 kb on + strand, within IAI46_04670 at 1001.181 kb on - strand, within IAI46_04670 at 1001.181 kb on - strand, within IAI46_04670 at 1001.314 kb on - strand, within IAI46_04670 at 1001.335 kb on + strand, within IAI46_04670
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 998,469 - IAI46_04650 0.74 -0.0 998,469 - IAI46_04650 0.74 +0.4 998,469 - IAI46_04650 0.74 -0.5 998,590 + +0.6 998,600 + +0.1 998,600 + -0.8 998,601 - +1.6 998,605 - +0.0 998,642 + -0.7 998,700 + +0.6 998,700 + +0.3 998,701 - +0.3 998,701 - -1.1 998,701 - +0.2 998,701 - -0.6 998,702 + -0.7 998,702 + -0.0 998,703 - +0.3 998,703 - -0.0 998,799 + IAI46_04655 0.15 -0.7 998,799 + IAI46_04655 0.15 +0.9 998,938 + IAI46_04655 0.42 -2.0 998,938 + IAI46_04655 0.42 +1.0 998,939 - IAI46_04655 0.42 -0.4 998,988 - IAI46_04655 0.51 +0.0 999,012 + IAI46_04655 0.56 -0.7 999,013 - IAI46_04655 0.56 +0.0 999,162 + IAI46_04655 0.85 +0.7 999,163 - IAI46_04655 0.85 +0.3 999,217 + -0.3 999,217 + +0.9 999,240 + -0.4 999,240 + +0.5 999,241 - -0.0 999,290 + +0.3 999,398 + +0.8 999,398 + -0.7 999,399 - +0.4 999,399 - -0.2 999,423 - +0.9 999,423 - -0.1 999,423 - -1.7 999,545 + IAI46_04660 0.12 -0.1 999,583 + IAI46_04660 0.16 +0.1 999,587 + IAI46_04660 0.16 +1.1 999,588 - IAI46_04660 0.16 +0.2 999,615 + IAI46_04660 0.19 +0.1 999,626 - IAI46_04660 0.20 +0.9 999,666 - IAI46_04660 0.24 +0.6 999,666 - IAI46_04660 0.24 -0.5 999,666 - IAI46_04660 0.24 +0.3 999,701 + IAI46_04660 0.27 +1.7 999,702 - IAI46_04660 0.27 +1.4 999,702 - IAI46_04660 0.27 +1.8 999,702 - IAI46_04660 0.27 -0.7 999,738 + IAI46_04660 0.31 +0.3 999,772 + IAI46_04660 0.34 +0.5 999,869 + IAI46_04660 0.43 -0.2 999,869 + IAI46_04660 0.43 -0.3 999,916 + IAI46_04660 0.48 -1.3 999,917 - IAI46_04660 0.48 -0.3 999,955 + IAI46_04660 0.51 +0.0 999,956 - IAI46_04660 0.52 -0.4 999,957 + IAI46_04660 0.52 -0.0 999,958 - IAI46_04660 0.52 +0.6 999,958 - IAI46_04660 0.52 +0.0 999,958 - IAI46_04660 0.52 +0.3 999,958 - IAI46_04660 0.52 -0.2 999,958 - IAI46_04660 0.52 +0.2 999,968 + IAI46_04660 0.53 +0.1 999,968 + IAI46_04660 0.53 -0.4 999,978 + IAI46_04660 0.54 +0.4 999,978 + IAI46_04660 0.54 -0.7 1,000,079 + IAI46_04660 0.63 -2.3 1,000,287 + IAI46_04660 0.83 -1.1 1,000,294 + IAI46_04660 0.84 -0.1 1,000,295 - IAI46_04660 0.84 +0.3 1,000,295 - IAI46_04660 0.84 +0.5 1,000,296 - IAI46_04660 0.84 -0.4 1,000,486 + +0.3 1,000,487 - -0.4 1,000,511 + +0.0 1,000,511 + +0.1 1,000,512 - -0.1 1,000,512 - -0.6 1,000,512 - -0.2 1,000,512 - -0.7 1,000,530 + -1.2 1,000,531 - +1.2 1,000,531 - -0.8 1,000,666 + IAI46_04665 0.21 +0.3 1,000,689 + IAI46_04665 0.24 +0.1 1,000,689 + IAI46_04665 0.24 +0.9 1,000,689 + IAI46_04665 0.24 -1.5 1,000,690 - IAI46_04665 0.25 +0.2 1,000,690 - IAI46_04665 0.25 -0.0 1,000,690 - IAI46_04665 0.25 -1.0 1,000,690 - IAI46_04665 0.25 +0.5 1,000,801 + IAI46_04665 0.44 +1.2 1,000,821 + IAI46_04665 0.47 +0.5 1,000,822 - IAI46_04665 0.47 -0.4 1,000,822 - IAI46_04665 0.47 -0.9 1,000,926 + IAI46_04665 0.65 -0.1 1,000,927 - IAI46_04665 0.65 -0.4 1,001,131 - -0.3 1,001,135 + -0.3 1,001,178 + IAI46_04670 0.12 +0.6 1,001,179 - IAI46_04670 0.12 +0.7 1,001,179 - IAI46_04670 0.12 -0.3 1,001,179 - IAI46_04670 0.12 -0.2 1,001,180 + IAI46_04670 0.12 +0.3 1,001,180 + IAI46_04670 0.12 -0.8 1,001,181 - IAI46_04670 0.12 -0.2 1,001,181 - IAI46_04670 0.12 +1.4 1,001,314 - IAI46_04670 0.30 -0.6 1,001,335 + IAI46_04670 0.32 +0.4
Or see this region's nucleotide sequence