Strain Fitness in Serratia liquefaciens MT49 around IAI46_04320

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04310 and IAI46_04315 overlap by 4 nucleotidesIAI46_04315 and IAI46_04320 are separated by 13 nucleotidesIAI46_04320 and IAI46_04325 are separated by 144 nucleotides IAI46_04310: IAI46_04310 - acireductone synthase, at 924,568 to 925,257 _04310 IAI46_04315: IAI46_04315 - acireductone dioxygenase, at 925,254 to 925,796 _04315 IAI46_04320: IAI46_04320 - S-methyl-5-thioribose-1-phosphate isomerase, at 925,810 to 926,838 _04320 IAI46_04325: IAI46_04325 - S-methyl-5-thioribose kinase, at 926,983 to 928,182 _04325 Position (kb) 925 926 927Strain fitness (log2 ratio) -2 -1 0 1 2 3at 924.875 kb on + strand, within IAI46_04310at 924.876 kb on - strand, within IAI46_04310at 924.899 kb on + strand, within IAI46_04310at 924.899 kb on + strand, within IAI46_04310at 924.899 kb on + strand, within IAI46_04310at 924.899 kb on + strand, within IAI46_04310at 924.900 kb on - strand, within IAI46_04310at 924.900 kb on - strand, within IAI46_04310at 924.929 kb on + strand, within IAI46_04310at 924.931 kb on + strand, within IAI46_04310at 924.932 kb on - strand, within IAI46_04310at 924.932 kb on - strand, within IAI46_04310at 924.937 kb on + strand, within IAI46_04310at 924.937 kb on + strand, within IAI46_04310at 925.068 kb on + strand, within IAI46_04310at 925.069 kb on - strand, within IAI46_04310at 925.325 kb on + strand, within IAI46_04315at 925.325 kb on + strand, within IAI46_04315at 925.325 kb on + strand, within IAI46_04315at 925.325 kb on + strand, within IAI46_04315at 925.325 kb on + strand, within IAI46_04315at 925.425 kb on + strand, within IAI46_04315at 925.425 kb on + strand, within IAI46_04315at 925.426 kb on - strand, within IAI46_04315at 925.798 kb on - strandat 925.925 kb on + strand, within IAI46_04320at 925.926 kb on - strand, within IAI46_04320at 926.052 kb on + strand, within IAI46_04320at 926.052 kb on + strand, within IAI46_04320at 926.052 kb on + strand, within IAI46_04320at 926.070 kb on - strand, within IAI46_04320at 926.070 kb on - strand, within IAI46_04320at 926.070 kb on - strand, within IAI46_04320at 926.087 kb on + strand, within IAI46_04320at 926.111 kb on + strand, within IAI46_04320at 926.111 kb on + strand, within IAI46_04320at 926.111 kb on + strand, within IAI46_04320at 926.112 kb on - strand, within IAI46_04320at 926.112 kb on - strand, within IAI46_04320at 926.232 kb on - strand, within IAI46_04320at 926.239 kb on - strand, within IAI46_04320at 926.341 kb on + strand, within IAI46_04320at 926.344 kb on + strand, within IAI46_04320at 926.345 kb on - strand, within IAI46_04320at 926.345 kb on - strand, within IAI46_04320at 926.361 kb on + strand, within IAI46_04320at 926.391 kb on + strand, within IAI46_04320at 926.392 kb on - strand, within IAI46_04320at 926.707 kb on - strand, within IAI46_04320at 926.707 kb on - strand, within IAI46_04320at 926.707 kb on - strand, within IAI46_04320at 926.707 kb on - strand, within IAI46_04320at 926.712 kb on + strand, within IAI46_04320at 926.712 kb on + strand, within IAI46_04320at 926.712 kb on + strand, within IAI46_04320at 926.713 kb on - strand, within IAI46_04320at 926.732 kb on - strand, within IAI46_04320at 926.827 kb on - strandat 926.846 kb on + strandat 926.861 kb on + strandat 926.861 kb on + strandat 926.861 kb on + strandat 926.865 kb on + strandat 926.865 kb on + strandat 926.866 kb on - strandat 926.866 kb on - strandat 926.866 kb on - strandat 926.882 kb on + strandat 926.883 kb on - strandat 926.908 kb on + strandat 926.909 kb on - strandat 926.909 kb on - strandat 926.909 kb on - strandat 926.929 kb on - strandat 926.942 kb on - strandat 926.942 kb on - strandat 926.944 kb on + strandat 926.997 kb on + strandat 927.003 kb on + strandat 927.003 kb on + strandat 927.025 kb on + strandat 927.025 kb on + strandat 927.026 kb on - strandat 927.026 kb on - strandat 927.026 kb on - strandat 927.167 kb on - strand, within IAI46_04325at 927.167 kb on - strand, within IAI46_04325at 927.170 kb on + strand, within IAI46_04325at 927.170 kb on + strand, within IAI46_04325at 927.171 kb on - strand, within IAI46_04325at 927.264 kb on + strand, within IAI46_04325at 927.264 kb on + strand, within IAI46_04325at 927.264 kb on + strand, within IAI46_04325at 927.264 kb on + strand, within IAI46_04325at 927.264 kb on + strand, within IAI46_04325at 927.264 kb on + strand, within IAI46_04325at 927.265 kb on - strand, within IAI46_04325at 927.333 kb on + strand, within IAI46_04325at 927.333 kb on + strand, within IAI46_04325at 927.333 kb on + strand, within IAI46_04325at 927.333 kb on + strand, within IAI46_04325at 927.334 kb on - strand, within IAI46_04325at 927.334 kb on - strand, within IAI46_04325at 927.334 kb on - strand, within IAI46_04325at 927.334 kb on - strand, within IAI46_04325at 927.364 kb on + strand, within IAI46_04325at 927.364 kb on + strand, within IAI46_04325at 927.364 kb on + strand, within IAI46_04325at 927.365 kb on - strand, within IAI46_04325at 927.365 kb on - strand, within IAI46_04325at 927.367 kb on + strand, within IAI46_04325at 927.368 kb on - strand, within IAI46_04325at 927.398 kb on - strand, within IAI46_04325at 927.398 kb on - strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.421 kb on - strand, within IAI46_04325at 927.421 kb on - strand, within IAI46_04325at 927.421 kb on - strand, within IAI46_04325at 927.433 kb on + strand, within IAI46_04325at 927.526 kb on + strand, within IAI46_04325at 927.526 kb on + strand, within IAI46_04325at 927.526 kb on + strand, within IAI46_04325at 927.526 kb on + strand, within IAI46_04325at 927.527 kb on - strand, within IAI46_04325at 927.578 kb on + strand, within IAI46_04325at 927.578 kb on + strand, within IAI46_04325at 927.578 kb on + strand, within IAI46_04325at 927.579 kb on - strand, within IAI46_04325at 927.589 kb on - strand, within IAI46_04325at 927.659 kb on + strand, within IAI46_04325at 927.660 kb on - strand, within IAI46_04325at 927.716 kb on + strand, within IAI46_04325at 927.716 kb on + strand, within IAI46_04325at 927.717 kb on - strand, within IAI46_04325at 927.736 kb on + strand, within IAI46_04325at 927.737 kb on - strand, within IAI46_04325at 927.790 kb on + strand, within IAI46_04325at 927.812 kb on + strand, within IAI46_04325

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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924,875 + IAI46_04310 0.44 +0.3
924,876 - IAI46_04310 0.45 +0.2
924,899 + IAI46_04310 0.48 +1.2
924,899 + IAI46_04310 0.48 +0.6
924,899 + IAI46_04310 0.48 -1.6
924,899 + IAI46_04310 0.48 +0.4
924,900 - IAI46_04310 0.48 -0.8
924,900 - IAI46_04310 0.48 -0.5
924,929 + IAI46_04310 0.52 +0.7
924,931 + IAI46_04310 0.53 -0.3
924,932 - IAI46_04310 0.53 +0.5
924,932 - IAI46_04310 0.53 +0.3
924,937 + IAI46_04310 0.53 -0.8
924,937 + IAI46_04310 0.53 +0.1
925,068 + IAI46_04310 0.72 -0.5
925,069 - IAI46_04310 0.73 -0.4
925,325 + IAI46_04315 0.13 -0.1
925,325 + IAI46_04315 0.13 +0.8
925,325 + IAI46_04315 0.13 -0.1
925,325 + IAI46_04315 0.13 +0.7
925,325 + IAI46_04315 0.13 -0.7
925,425 + IAI46_04315 0.31 -0.2
925,425 + IAI46_04315 0.31 +0.8
925,426 - IAI46_04315 0.32 -0.4
925,798 - -0.5
925,925 + IAI46_04320 0.11 -0.3
925,926 - IAI46_04320 0.11 +2.1
926,052 + IAI46_04320 0.24 +0.4
926,052 + IAI46_04320 0.24 -0.2
926,052 + IAI46_04320 0.24 +0.0
926,070 - IAI46_04320 0.25 -1.5
926,070 - IAI46_04320 0.25 +0.2
926,070 - IAI46_04320 0.25 -0.2
926,087 + IAI46_04320 0.27 +0.6
926,111 + IAI46_04320 0.29 +0.3
926,111 + IAI46_04320 0.29 +1.4
926,111 + IAI46_04320 0.29 -0.6
926,112 - IAI46_04320 0.29 +0.7
926,112 - IAI46_04320 0.29 +0.5
926,232 - IAI46_04320 0.41 +0.1
926,239 - IAI46_04320 0.42 +0.1
926,341 + IAI46_04320 0.52 +0.1
926,344 + IAI46_04320 0.52 +0.2
926,345 - IAI46_04320 0.52 +0.3
926,345 - IAI46_04320 0.52 +0.0
926,361 + IAI46_04320 0.54 +0.0
926,391 + IAI46_04320 0.56 -0.1
926,392 - IAI46_04320 0.57 -0.7
926,707 - IAI46_04320 0.87 +0.3
926,707 - IAI46_04320 0.87 +0.8
926,707 - IAI46_04320 0.87 -0.5
926,707 - IAI46_04320 0.87 +0.2
926,712 + IAI46_04320 0.88 +0.9
926,712 + IAI46_04320 0.88 -0.2
926,712 + IAI46_04320 0.88 -0.2
926,713 - IAI46_04320 0.88 +3.1
926,732 - IAI46_04320 0.90 +0.4
926,827 - +1.1
926,846 + +0.5
926,861 + +0.1
926,861 + +0.2
926,861 + +0.7
926,865 + -0.3
926,865 + -0.1
926,866 - -0.0
926,866 - +0.7
926,866 - -0.0
926,882 + -0.3
926,883 - +0.4
926,908 + +0.1
926,909 - -0.3
926,909 - -1.6
926,909 - +0.5
926,929 - -0.6
926,942 - +1.3
926,942 - +0.4
926,944 + +0.4
926,997 + -0.7
927,003 + -0.3
927,003 + -0.9
927,025 + +0.3
927,025 + +0.0
927,026 - -0.4
927,026 - -0.3
927,026 - -0.3
927,167 - IAI46_04325 0.15 +0.3
927,167 - IAI46_04325 0.15 +0.2
927,170 + IAI46_04325 0.16 -0.9
927,170 + IAI46_04325 0.16 -0.5
927,171 - IAI46_04325 0.16 +0.2
927,264 + IAI46_04325 0.23 -0.4
927,264 + IAI46_04325 0.23 -2.2
927,264 + IAI46_04325 0.23 -0.2
927,264 + IAI46_04325 0.23 +1.3
927,264 + IAI46_04325 0.23 +0.2
927,264 + IAI46_04325 0.23 +0.1
927,265 - IAI46_04325 0.23 +0.4
927,333 + IAI46_04325 0.29 +0.0
927,333 + IAI46_04325 0.29 +0.3
927,333 + IAI46_04325 0.29 +0.2
927,333 + IAI46_04325 0.29 -0.1
927,334 - IAI46_04325 0.29 +0.7
927,334 - IAI46_04325 0.29 -0.6
927,334 - IAI46_04325 0.29 +0.1
927,334 - IAI46_04325 0.29 +0.2
927,364 + IAI46_04325 0.32 +0.2
927,364 + IAI46_04325 0.32 -1.6
927,364 + IAI46_04325 0.32 +0.3
927,365 - IAI46_04325 0.32 +0.3
927,365 - IAI46_04325 0.32 -0.5
927,367 + IAI46_04325 0.32 +0.1
927,368 - IAI46_04325 0.32 +0.5
927,398 - IAI46_04325 0.35 -0.2
927,398 - IAI46_04325 0.35 -0.2
927,420 + IAI46_04325 0.36 -0.7
927,420 + IAI46_04325 0.36 +0.7
927,420 + IAI46_04325 0.36 -0.8
927,420 + IAI46_04325 0.36 +0.7
927,420 + IAI46_04325 0.36 +0.1
927,421 - IAI46_04325 0.36 +0.4
927,421 - IAI46_04325 0.36 -1.3
927,421 - IAI46_04325 0.36 -1.5
927,433 + IAI46_04325 0.38 -0.2
927,526 + IAI46_04325 0.45 +0.1
927,526 + IAI46_04325 0.45 +0.2
927,526 + IAI46_04325 0.45 -0.5
927,526 + IAI46_04325 0.45 +1.3
927,527 - IAI46_04325 0.45 -0.4
927,578 + IAI46_04325 0.50 -0.3
927,578 + IAI46_04325 0.50 +0.2
927,578 + IAI46_04325 0.50 -0.3
927,579 - IAI46_04325 0.50 -0.9
927,589 - IAI46_04325 0.51 +0.1
927,659 + IAI46_04325 0.56 -0.4
927,660 - IAI46_04325 0.56 +0.1
927,716 + IAI46_04325 0.61 -0.2
927,716 + IAI46_04325 0.61 +0.7
927,717 - IAI46_04325 0.61 -1.5
927,736 + IAI46_04325 0.63 +0.3
927,737 - IAI46_04325 0.63 +0.7
927,790 + IAI46_04325 0.67 -0.0
927,812 + IAI46_04325 0.69 -0.5

Or see this region's nucleotide sequence