Strain Fitness in Serratia liquefaciens MT49 around IAI46_03895

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03885 and IAI46_03890 overlap by 4 nucleotidesIAI46_03890 and IAI46_03895 are separated by 82 nucleotidesIAI46_03895 and IAI46_03900 are separated by 165 nucleotidesIAI46_03900 and IAI46_03905 are separated by 68 nucleotides IAI46_03885: IAI46_03885 - fructose-1-phosphate/6-phosphogluconate phosphatase, at 842,850 to 843,416 _03885 IAI46_03890: IAI46_03890 - DedA family protein, at 843,413 to 843,841 _03890 IAI46_03895: IAI46_03895 - glutamate--cysteine ligase, at 843,924 to 845,486 _03895 IAI46_03900: IAI46_03900 - S-ribosylhomocysteine lyase, at 845,652 to 846,167 _03900 IAI46_03905: IAI46_03905 - HlyC/CorC family transporter, at 846,236 to 847,525 _03905 Position (kb) 843 844 845 846Strain fitness (log2 ratio) -2 -1 0 1 2at 843.144 kb on + strand, within IAI46_03885at 843.144 kb on + strand, within IAI46_03885at 843.144 kb on + strand, within IAI46_03885at 843.145 kb on - strand, within IAI46_03885at 843.262 kb on + strand, within IAI46_03885at 843.262 kb on + strand, within IAI46_03885at 843.262 kb on + strand, within IAI46_03885at 843.263 kb on - strand, within IAI46_03885at 843.263 kb on - strand, within IAI46_03885at 843.263 kb on - strand, within IAI46_03885at 843.313 kb on + strand, within IAI46_03885at 843.313 kb on + strand, within IAI46_03885at 843.313 kb on + strand, within IAI46_03885at 843.313 kb on + strand, within IAI46_03885at 843.314 kb on - strand, within IAI46_03885at 843.362 kb on + strandat 843.387 kb on - strandat 843.387 kb on - strandat 843.397 kb on + strandat 843.397 kb on + strandat 843.398 kb on - strandat 843.408 kb on - strandat 843.419 kb on - strandat 843.422 kb on - strandat 843.422 kb on - strandat 843.422 kb on - strandat 843.422 kb on - strandat 843.422 kb on - strandat 843.792 kb on - strand, within IAI46_03890at 843.792 kb on - strand, within IAI46_03890at 843.792 kb on - strand, within IAI46_03890at 843.792 kb on - strand, within IAI46_03890at 843.805 kb on + strandat 843.806 kb on - strandat 843.806 kb on - strandat 843.810 kb on + strandat 843.810 kb on + strandat 843.851 kb on + strandat 843.851 kb on + strandat 843.852 kb on - strandat 843.852 kb on - strandat 843.852 kb on - strandat 843.852 kb on - strandat 843.854 kb on - strandat 843.862 kb on - strandat 843.891 kb on - strandat 843.906 kb on + strandat 843.907 kb on - strandat 843.937 kb on + strandat 843.979 kb on + strandat 844.121 kb on - strand, within IAI46_03895at 844.121 kb on - strand, within IAI46_03895at 844.127 kb on + strand, within IAI46_03895at 844.128 kb on - strand, within IAI46_03895at 844.188 kb on + strand, within IAI46_03895at 844.193 kb on - strand, within IAI46_03895at 844.193 kb on - strand, within IAI46_03895at 844.217 kb on + strand, within IAI46_03895at 844.217 kb on + strand, within IAI46_03895at 844.218 kb on - strand, within IAI46_03895at 844.218 kb on - strand, within IAI46_03895at 844.218 kb on - strand, within IAI46_03895at 844.244 kb on + strand, within IAI46_03895at 844.314 kb on + strand, within IAI46_03895at 844.374 kb on + strand, within IAI46_03895at 844.461 kb on + strand, within IAI46_03895at 844.479 kb on - strand, within IAI46_03895at 844.482 kb on + strand, within IAI46_03895at 844.482 kb on + strand, within IAI46_03895at 844.482 kb on + strand, within IAI46_03895at 844.482 kb on + strand, within IAI46_03895at 844.483 kb on - strand, within IAI46_03895at 844.483 kb on - strand, within IAI46_03895at 844.483 kb on - strand, within IAI46_03895at 844.510 kb on - strand, within IAI46_03895at 844.584 kb on - strand, within IAI46_03895at 844.602 kb on + strand, within IAI46_03895at 844.645 kb on - strand, within IAI46_03895at 844.645 kb on - strand, within IAI46_03895at 844.698 kb on + strand, within IAI46_03895at 844.698 kb on + strand, within IAI46_03895at 844.698 kb on + strand, within IAI46_03895at 844.699 kb on - strand, within IAI46_03895at 844.776 kb on + strand, within IAI46_03895at 844.822 kb on - strand, within IAI46_03895at 844.822 kb on - strand, within IAI46_03895at 844.822 kb on - strand, within IAI46_03895at 844.899 kb on + strand, within IAI46_03895at 845.138 kb on - strand, within IAI46_03895at 845.142 kb on - strand, within IAI46_03895at 845.142 kb on - strand, within IAI46_03895at 845.186 kb on + strand, within IAI46_03895at 845.209 kb on - strand, within IAI46_03895at 845.334 kb on + strandat 845.428 kb on + strandat 845.428 kb on + strandat 845.428 kb on + strandat 845.429 kb on - strandat 845.442 kb on - strandat 845.442 kb on - strandat 845.446 kb on + strandat 845.446 kb on + strandat 845.447 kb on - strandat 845.447 kb on - strandat 845.517 kb on + strandat 845.517 kb on + strandat 845.518 kb on - strandat 845.518 kb on - strandat 845.518 kb on - strandat 845.567 kb on + strandat 845.568 kb on - strandat 845.568 kb on - strandat 845.603 kb on + strandat 845.604 kb on - strandat 845.623 kb on + strandat 845.624 kb on - strandat 845.627 kb on + strandat 845.628 kb on - strandat 845.667 kb on - strandat 845.677 kb on + strandat 845.677 kb on + strandat 845.814 kb on - strand, within IAI46_03900at 845.914 kb on - strand, within IAI46_03900at 846.042 kb on + strand, within IAI46_03900at 846.042 kb on + strand, within IAI46_03900at 846.042 kb on + strand, within IAI46_03900at 846.042 kb on + strand, within IAI46_03900at 846.042 kb on + strand, within IAI46_03900at 846.043 kb on - strand, within IAI46_03900at 846.043 kb on - strand, within IAI46_03900at 846.043 kb on - strand, within IAI46_03900at 846.043 kb on - strand, within IAI46_03900at 846.043 kb on - strand, within IAI46_03900at 846.043 kb on - strand, within IAI46_03900at 846.043 kb on - strand, within IAI46_03900at 846.048 kb on - strand, within IAI46_03900at 846.048 kb on - strand, within IAI46_03900at 846.048 kb on - strand, within IAI46_03900at 846.106 kb on + strand, within IAI46_03900at 846.106 kb on + strand, within IAI46_03900at 846.107 kb on - strand, within IAI46_03900at 846.107 kb on - strand, within IAI46_03900at 846.165 kb on + strandat 846.165 kb on + strandat 846.298 kb on + strandat 846.298 kb on + strandat 846.298 kb on + strandat 846.299 kb on - strandat 846.299 kb on - strandat 846.299 kb on - strandat 846.299 kb on - strandat 846.299 kb on - strandat 846.299 kb on - strandat 846.299 kb on - strandat 846.331 kb on - strandat 846.331 kb on - strandat 846.474 kb on - strand, within IAI46_03905at 846.474 kb on - strand, within IAI46_03905

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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843,144 + IAI46_03885 0.52 -0.1
843,144 + IAI46_03885 0.52 +0.8
843,144 + IAI46_03885 0.52 -0.3
843,145 - IAI46_03885 0.52 +0.2
843,262 + IAI46_03885 0.73 +0.8
843,262 + IAI46_03885 0.73 +0.1
843,262 + IAI46_03885 0.73 +0.5
843,263 - IAI46_03885 0.73 +0.5
843,263 - IAI46_03885 0.73 +0.3
843,263 - IAI46_03885 0.73 +0.4
843,313 + IAI46_03885 0.82 +0.7
843,313 + IAI46_03885 0.82 +0.5
843,313 + IAI46_03885 0.82 -0.1
843,313 + IAI46_03885 0.82 +0.3
843,314 - IAI46_03885 0.82 +0.5
843,362 + -0.3
843,387 - +1.4
843,387 - +0.6
843,397 + -2.4
843,397 + +0.1
843,398 - +0.0
843,408 - +1.3
843,419 - +0.1
843,422 - -0.4
843,422 - -0.2
843,422 - +0.5
843,422 - +0.2
843,422 - -0.9
843,792 - IAI46_03890 0.88 -0.1
843,792 - IAI46_03890 0.88 +0.5
843,792 - IAI46_03890 0.88 +0.6
843,792 - IAI46_03890 0.88 +0.0
843,805 + -1.4
843,806 - +0.8
843,806 - +0.5
843,810 + +1.3
843,810 + +0.7
843,851 + +0.8
843,851 + +0.5
843,852 - +0.1
843,852 - +0.7
843,852 - -0.8
843,852 - -0.1
843,854 - +0.4
843,862 - -0.5
843,891 - +1.1
843,906 + +0.8
843,907 - -0.5
843,937 + +0.3
843,979 + -0.3
844,121 - IAI46_03895 0.13 -0.1
844,121 - IAI46_03895 0.13 +0.1
844,127 + IAI46_03895 0.13 +0.2
844,128 - IAI46_03895 0.13 +1.0
844,188 + IAI46_03895 0.17 -0.4
844,193 - IAI46_03895 0.17 +1.0
844,193 - IAI46_03895 0.17 -0.1
844,217 + IAI46_03895 0.19 +2.7
844,217 + IAI46_03895 0.19 -0.4
844,218 - IAI46_03895 0.19 +0.5
844,218 - IAI46_03895 0.19 +0.1
844,218 - IAI46_03895 0.19 +2.1
844,244 + IAI46_03895 0.20 +0.1
844,314 + IAI46_03895 0.25 +0.9
844,374 + IAI46_03895 0.29 +0.5
844,461 + IAI46_03895 0.34 +0.9
844,479 - IAI46_03895 0.36 +0.8
844,482 + IAI46_03895 0.36 +1.9
844,482 + IAI46_03895 0.36 +0.7
844,482 + IAI46_03895 0.36 +1.0
844,482 + IAI46_03895 0.36 -1.4
844,483 - IAI46_03895 0.36 +0.4
844,483 - IAI46_03895 0.36 +0.8
844,483 - IAI46_03895 0.36 -1.8
844,510 - IAI46_03895 0.37 -2.7
844,584 - IAI46_03895 0.42 -1.2
844,602 + IAI46_03895 0.43 +0.8
844,645 - IAI46_03895 0.46 +1.2
844,645 - IAI46_03895 0.46 +0.1
844,698 + IAI46_03895 0.50 +1.7
844,698 + IAI46_03895 0.50 -0.7
844,698 + IAI46_03895 0.50 +1.4
844,699 - IAI46_03895 0.50 +0.7
844,776 + IAI46_03895 0.55 +1.2
844,822 - IAI46_03895 0.57 +0.2
844,822 - IAI46_03895 0.57 -0.2
844,822 - IAI46_03895 0.57 -0.1
844,899 + IAI46_03895 0.62 +1.3
845,138 - IAI46_03895 0.78 +0.4
845,142 - IAI46_03895 0.78 +1.1
845,142 - IAI46_03895 0.78 -1.4
845,186 + IAI46_03895 0.81 +2.1
845,209 - IAI46_03895 0.82 +0.9
845,334 + +1.1
845,428 + +0.2
845,428 + +0.6
845,428 + +0.6
845,429 - -0.7
845,442 - +0.5
845,442 - -0.7
845,446 + -0.1
845,446 + -0.1
845,447 - -0.1
845,447 - +0.8
845,517 + +0.4
845,517 + +1.3
845,518 - +0.5
845,518 - +0.8
845,518 - -1.6
845,567 + -0.3
845,568 - -0.4
845,568 - +2.2
845,603 + -0.2
845,604 - +0.4
845,623 + +0.5
845,624 - +0.3
845,627 + +0.1
845,628 - +0.5
845,667 - +0.2
845,677 + +0.2
845,677 + -0.7
845,814 - IAI46_03900 0.31 +0.4
845,914 - IAI46_03900 0.51 -0.4
846,042 + IAI46_03900 0.76 +0.2
846,042 + IAI46_03900 0.76 -0.5
846,042 + IAI46_03900 0.76 +0.1
846,042 + IAI46_03900 0.76 -0.8
846,042 + IAI46_03900 0.76 +0.1
846,043 - IAI46_03900 0.76 -0.2
846,043 - IAI46_03900 0.76 +0.3
846,043 - IAI46_03900 0.76 +0.5
846,043 - IAI46_03900 0.76 -1.5
846,043 - IAI46_03900 0.76 +0.5
846,043 - IAI46_03900 0.76 +1.3
846,043 - IAI46_03900 0.76 -0.2
846,048 - IAI46_03900 0.77 -0.0
846,048 - IAI46_03900 0.77 -0.3
846,048 - IAI46_03900 0.77 +0.0
846,106 + IAI46_03900 0.88 -0.3
846,106 + IAI46_03900 0.88 -0.0
846,107 - IAI46_03900 0.88 -0.2
846,107 - IAI46_03900 0.88 +0.8
846,165 + +0.8
846,165 + +0.4
846,298 + +0.6
846,298 + +1.0
846,298 + +0.4
846,299 - +0.4
846,299 - +0.7
846,299 - -0.5
846,299 - +0.3
846,299 - -1.4
846,299 - +0.4
846,299 - -0.1
846,331 - +1.4
846,331 - +0.1
846,474 - IAI46_03905 0.18 +1.2
846,474 - IAI46_03905 0.18 +0.7

Or see this region's nucleotide sequence